Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 158333748

GI number: 158333748

Start: 542143

End: 543057

Strand: Direct

Name: rbcR [H]

Synonym: AM1_0556

Alternate gene names: 158333748

Gene position: 542143-543057 (Clockwise)

Preceding gene: 158333746

Following gene: 158333751

Centisome position: 8.34

GC content: 46.34

Gene sequence:

>915_bases
ATGCAGCCTACTCTACATCAACTGAAAGTGTTTGAAACTGCTGCCCGCCACGGCAGCTTCACCCGCGCCGCTGAAGAACT
CTATCTTACCCAACCTACCGTTTCGATTCAGATTAAGCAGCTCTCCAAAACCGTTGGCTTCCCCTTATTCGAGAAGTTGG
GAAAACAGCTCTACTTAACAGAAGTGGGCAATCGGTTATTTACCACCTGCCAATCTATCTTTGAAGAATTAGATCAATTC
GAGATGATTGTCAGTGATTTGCAAGGAATGACCCAGGGGAAGTTACATCTTGCTACTGTCACCACCTGCAAGTATTTTGT
CCCCCGCTTGTTGGGTAACTTTTGTGATCAATATCCCGGCATTGATATTTCTTTAAAAATTACCAACCATCTCCAGCTGG
AAAAGCGGATGATGGAAAACCGAGATGATCTGTACATCCTCAGTCATCCACCCCAACATATTGATCTCAAAGTGCAGCCC
GTCATTAAAAATCCACTTGTGGTGGTTGCCCCCCCTTCCCATCCCCTCGTGGGTCAAAAGAATATTGATATTTCTGCCCT
TAACAATCAGCGCTTTATTATGCGGGAGCCAGGCTCGGGAACCCGCCACGCCGTTCAGGCCCTCTTCAACAAACATAAAG
TCAATGTTGAAATCAAACTAGAACTCGGAAGTAATGAGGCGATCAAACAGGCGATTGCAGGGGGACTTGGAATCTCAGTT
TTATCGCGCCATTCCCTAAATGGTCGAGAATATACCGACCTCGCCATACTAGATGTCGAGCATTTTCCCATTGAGCAGCA
ATGGTCCGTGGCCTATTTATCCGGTAAACATCTCTCTGTTGTGGCTGAAACCTTTCTGCATTACCTCGTCTCGGTTACGG
ATCATGCTGAGATGCCTTGGATGCATTTCAAATAG

Upstream 100 bases:

>100_bases
TTGCTCAGAGGACATATTTCTTAGATGAATAGACAATTATCTATTACAATGGGACCAGGCAACGACTAAAGTCTATCCAA
AATACCTCTGTGCGATCGCA

Downstream 100 bases:

>100_bases
TTTCCGTCAGTACCTTTGAATCATTTGGAATCACGAATCTAGAAGTTTGGCACCAGATCTCTAGGATTGGCTACCGCAGA
AAAACGTATAGCGGGGACAA

Product: rubisco operon transcriptional regulator RbcR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MQPTLHQLKVFETAARHGSFTRAAEELYLTQPTVSIQIKQLSKTVGFPLFEKLGKQLYLTEVGNRLFTTCQSIFEELDQF
EMIVSDLQGMTQGKLHLATVTTCKYFVPRLLGNFCDQYPGIDISLKITNHLQLEKRMMENRDDLYILSHPPQHIDLKVQP
VIKNPLVVVAPPSHPLVGQKNIDISALNNQRFIMREPGSGTRHAVQALFNKHKVNVEIKLELGSNEAIKQAIAGGLGISV
LSRHSLNGREYTDLAILDVEHFPIEQQWSVAYLSGKHLSVVAETFLHYLVSVTDHAEMPWMHFK

Sequences:

>Translated_304_residues
MQPTLHQLKVFETAARHGSFTRAAEELYLTQPTVSIQIKQLSKTVGFPLFEKLGKQLYLTEVGNRLFTTCQSIFEELDQF
EMIVSDLQGMTQGKLHLATVTTCKYFVPRLLGNFCDQYPGIDISLKITNHLQLEKRMMENRDDLYILSHPPQHIDLKVQP
VIKNPLVVVAPPSHPLVGQKNIDISALNNQRFIMREPGSGTRHAVQALFNKHKVNVEIKLELGSNEAIKQAIAGGLGISV
LSRHSLNGREYTDLAILDVEHFPIEQQWSVAYLSGKHLSVVAETFLHYLVSVTDHAEMPWMHFK
>Mature_304_residues
MQPTLHQLKVFETAARHGSFTRAAEELYLTQPTVSIQIKQLSKTVGFPLFEKLGKQLYLTEVGNRLFTTCQSIFEELDQF
EMIVSDLQGMTQGKLHLATVTTCKYFVPRLLGNFCDQYPGIDISLKITNHLQLEKRMMENRDDLYILSHPPQHIDLKVQP
VIKNPLVVVAPPSHPLVGQKNIDISALNNQRFIMREPGSGTRHAVQALFNKHKVNVEIKLELGSNEAIKQAIAGGLGISV
LSRHSLNGREYTDLAILDVEHFPIEQQWSVAYLSGKHLSVVAETFLHYLVSVTDHAEMPWMHFK

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:
GO:0003677: Rubisco operon transcriptional regulator RbcR
GO:0003700: Rubisco operon transcriptional regulator RbcR
GO:0006351: Rubisco operon transcriptional regulator RbcR
GO:0006355: Rubisco operon transcriptional regulator RbcR

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=305, Percent_Identity=30.1639344262295, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI157672245, Length=223, Percent_Identity=28.2511210762332, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1789204, Length=276, Percent_Identity=26.8115942028986, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI145693105, Length=304, Percent_Identity=22.6973684210526, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787530, Length=258, Percent_Identity=23.6434108527132, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789173, Length=173, Percent_Identity=34.1040462427746, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87082132, Length=297, Percent_Identity=23.2323232323232, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788748, Length=286, Percent_Identity=23.7762237762238, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=27.0903010033445, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787879, Length=278, Percent_Identity=23.3812949640288, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=244, Percent_Identity=27.4590163934426, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=238, Percent_Identity=21.4285714285714, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788296, Length=265, Percent_Identity=24.9056603773585, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=242, Percent_Identity=26.4462809917355, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=184, Percent_Identity=21.7391304347826, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788297, Length=238, Percent_Identity=23.5294117647059, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=128, Percent_Identity=33.59375, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=226, Percent_Identity=24.3362831858407, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34417; Mature: 34417

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPTLHQLKVFETAARHGSFTRAAEELYLTQPTVSIQIKQLSKTVGFPLFEKLGKQLYLT
CCCHHHHHHHHHHHHHCCCHHHHHHHHEEECCCEEEEHHHHHHHHCCHHHHHHCCEEEHH
EVGNRLFTTCQSIFEELDQFEMIVSDLQGMTQGKLHLATVTTCKYFVPRLLGNFCDQYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
IDISLKITNHLQLEKRMMENRDDLYILSHPPQHIDLKVQPVIKNPLVVVAPPSHPLVGQK
CEEEEEECCHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCCCCC
NIDISALNNQRFIMREPGSGTRHAVQALFNKHKVNVEIKLELGSNEAIKQAIAGGLGISV
CCEEEEECCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHCCCCHHH
LSRHSLNGREYTDLAILDVEHFPIEQQWSVAYLSGKHLSVVAETFLHYLVSVTDHAEMPW
HHHCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
MHFK
CCCC
>Mature Secondary Structure
MQPTLHQLKVFETAARHGSFTRAAEELYLTQPTVSIQIKQLSKTVGFPLFEKLGKQLYLT
CCCHHHHHHHHHHHHHCCCHHHHHHHHEEECCCEEEEHHHHHHHHCCHHHHHHCCEEEHH
EVGNRLFTTCQSIFEELDQFEMIVSDLQGMTQGKLHLATVTTCKYFVPRLLGNFCDQYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCC
IDISLKITNHLQLEKRMMENRDDLYILSHPPQHIDLKVQPVIKNPLVVVAPPSHPLVGQK
CEEEEEECCHHHHHHHHHCCCCCEEEEECCCCEEEEEEEEECCCCEEEEECCCCCCCCCC
NIDISALNNQRFIMREPGSGTRHAVQALFNKHKVNVEIKLELGSNEAIKQAIAGGLGISV
CCEEEEECCCEEEEECCCCCHHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHCCCCHHH
LSRHSLNGREYTDLAILDVEHFPIEQQWSVAYLSGKHLSVVAETFLHYLVSVTDHAEMPW
HHHCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC
MHFK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA