Click here to switch to the map view.

The map label for this gene is yfiK [H]

Identifier: 158333709

GI number: 158333709

Start: 488756

End: 489385

Strand: Reverse

Name: yfiK [H]

Synonym: AM1_0515

Alternate gene names: 158333709

Gene position: 489385-488756 (Counterclockwise)

Preceding gene: 158333710

Following gene: 158333706

Centisome position: 7.52

GC content: 50.63

Gene sequence:

>630_bases
ATGATTCGAGTGATGTTGGTAGATGATCAAGGGATTGTGCGGGAAGGGCTCTCCAGTCTGCTCAACACCAAACCCGATTT
AGAAGTCGTGGGTGAGGCAGAGAACGGTCAAGTTGCCCTTGAGAAAGCTTTGGAAATCCAGCCCGATATTATCCTGATGG
ATATGCGTATGCCGGTGATGGATGGAGTTGCTGCGACCCAAGCCATCCGGCAGCAGGCTCCTCAAATCAATATATTGGTC
TTAACCACGTTCGATGATGAGGACTATGTCTCTCAAGCTATGCGCTTAGGGGCCAAGGGCTATCTGCTCAAGGATACCCC
CTCTGATGAATTAGCAGAGGCCATTCGAGCGGTTCACAAAGGGTACACTCACTTTGGCCCTGGTTTGTTTGAGAAGATGA
TCACGGCAACGCCAACGGTGGAAGAACCGCCCGAATTGGCCGAACTGACGCCCCGAGAGACGGAAGTTTTGGCTTTAATC
GCAGAGGGCCAGAGCAATCGAGAAATTGCTGAGGCCCTGTATATTTCTGAACGGACGGTCAAAAACCACGTCAATAGTAT
TTTGAAACGGTTAAATGTGCGTGATCGCACTCAAGCTGCGATCCTAGCCACCAACCTACAACAGCGCTAG

Upstream 100 bases:

>100_bases
AGGAACGGACAGTAGCCTTGGGCGGCCTATTCGAACTCTGGAGCCAACCTCAAACAGGCTGCCATATTCAGATCAAGATT
CCTCGATTAGGAGAAGAATA

Downstream 100 bases:

>100_bases
CAGTATAGGTTGGGGCATATCGCACCTGAAATTAAATTCATCTATACCTATTAATTCAGGGCTTAGTATTCAGGTACAGA
AGAATCGATTTCACGGCTCC

Product: two-component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVMDGVAATQAIRQQAPQINILV
LTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAVHKGYTHFGPGLFEKMITATPTVEEPPELAELTPRETEVLALI
AEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILATNLQQR

Sequences:

>Translated_209_residues
MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVMDGVAATQAIRQQAPQINILV
LTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAVHKGYTHFGPGLFEKMITATPTVEEPPELAELTPRETEVLALI
AEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILATNLQQR
>Mature_209_residues
MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVMDGVAATQAIRQQAPQINILV
LTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAVHKGYTHFGPGLFEKMITATPTVEEPPELAELTPRETEVLALI
AEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILATNLQQR

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=39.9038461538462, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI1788222, Length=205, Percent_Identity=32.6829268292683, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787473, Length=203, Percent_Identity=35.9605911330049, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1790102, Length=200, Percent_Identity=31.5, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786747, Length=192, Percent_Identity=26.5625, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=24.2105263157895, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789937, Length=209, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788550, Length=191, Percent_Identity=27.7486910994764, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788546, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787277, Length=186, Percent_Identity=30.1075268817204, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082052, Length=111, Percent_Identity=34.2342342342342, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790299, Length=122, Percent_Identity=33.6065573770492, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23159; Mature: 23159

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVM
CEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
DGVAATQAIRQQAPQINILVLTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAVHK
HHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHC
GYTHFGPGLFEKMITATPTVEEPPELAELTPRETEVLALIAEGQSNREIAEALYISERTV
CCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
KNHVNSILKRLNVRDRTQAAILATNLQQR
HHHHHHHHHHCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MIRVMLVDDQGIVREGLSSLLNTKPDLEVVGEAENGQVALEKALEIQPDIILMDMRMPVM
CEEEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHH
DGVAATQAIRQQAPQINILVLTTFDDEDYVSQAMRLGAKGYLLKDTPSDELAEAIRAVHK
HHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHC
GYTHFGPGLFEKMITATPTVEEPPELAELTPRETEVLALIAEGQSNREIAEALYISERTV
CCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
KNHVNSILKRLNVRDRTQAAILATNLQQR
HHHHHHHHHHCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]