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The map label for this gene is exbB [C]

Identifier: 158333399

GI number: 158333399

Start: 171021

End: 171728

Strand: Reverse

Name: exbB [C]

Synonym: AM1_0171

Alternate gene names: 158333399

Gene position: 171728-171021 (Counterclockwise)

Preceding gene: 158333400

Following gene: 158333398

Centisome position: 2.64

GC content: 50.28

Gene sequence:

>708_bases
GTGTCCACAATCTATACTTTCCTGGCCAAGGGTGGCCCAGTCATGATTCCCATTGCGGGATTATCTGTACTGACTTTAGC
GTGTGCCTTCGAACGAACCATTTTCTGGATCCGTTTGATCAGTCAAGAACATCGTATTGTTCATGATGTCTTGGATGCAG
CTCGCTGCAGCTTAGAGGAAGCGGAAGCCATTGCTCAGCATGCTCGGTTTTTGCCCATTGGCCGATTCCTGTTAGCACCG
CTGCGCTTGCATCAACCCTCGCCAGAGACCTTCCGCTTAGCCCTGGAAGCGGCGGCAGATAAAGAATTTGTCAGAATGCG
CAAGGGCGATAAGCTACTGGAAACAACTGTGGCGGTTGCCCCCCTGATGGGTCTTTTGGGAACAGTAACTGGCCTGATCA
ATACTTTTAATAATCTCAACATTGGCAGTGGGGGCACCTCTGAACAGGCAACCAAAGCGGCTGCAGGGATTGGTGAAGCC
CTCTTAACCACAGCAGCGGGGATGGTCGTTGCCATTTTGGCCCTGATTGTTCTACGCATTTTTGTGATTTTGCAGGCCCG
CCAAGTCGATACATTCTCCGAAGTGGGAAGCGAAATGGAATTGATTTATCGACAGGTCTGGTACGAACCCAACCAGGTCA
ACCGTCCTGCCTATTTGCCAAAAGGCAGTTCAGTTGAACCTACCCAGGTTACTTTAGAAACTCTGTAA

Upstream 100 bases:

>100_bases
CAGTTCTCTTAACCCAGTGTTGAGAGGGTTTCAGTTATCCTATTCGACGTGAGTCTTCTCTTCATAAGGCTGACAAGACC
TGGTTAATTCTGGAGACACC

Downstream 100 bases:

>100_bases
AGGTATTGCTGCTGCCCTTGGTACTTTGCATTCAAATCTATGAAATTTGCTCAACAAGAATCGACGATTCCCGAAATTAA
CTTGATTCCCATGCTCAACG

Product: biopolymer transport protein ExbB like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSTIYTFLAKGGPVMIPIAGLSVLTLACAFERTIFWIRLISQEHRIVHDVLDAARCSLEEAEAIAQHARFLPIGRFLLAP
LRLHQPSPETFRLALEAAADKEFVRMRKGDKLLETTVAVAPLMGLLGTVTGLINTFNNLNIGSGGTSEQATKAAAGIGEA
LLTTAAGMVVAILALIVLRIFVILQARQVDTFSEVGSEMELIYRQVWYEPNQVNRPAYLPKGSSVEPTQVTLETL

Sequences:

>Translated_235_residues
MSTIYTFLAKGGPVMIPIAGLSVLTLACAFERTIFWIRLISQEHRIVHDVLDAARCSLEEAEAIAQHARFLPIGRFLLAP
LRLHQPSPETFRLALEAAADKEFVRMRKGDKLLETTVAVAPLMGLLGTVTGLINTFNNLNIGSGGTSEQATKAAAGIGEA
LLTTAAGMVVAILALIVLRIFVILQARQVDTFSEVGSEMELIYRQVWYEPNQVNRPAYLPKGSSVEPTQVTLETL
>Mature_234_residues
STIYTFLAKGGPVMIPIAGLSVLTLACAFERTIFWIRLISQEHRIVHDVLDAARCSLEEAEAIAQHARFLPIGRFLLAPL
RLHQPSPETFRLALEAAADKEFVRMRKGDKLLETTVAVAPLMGLLGTVTGLINTFNNLNIGSGGTSEQATKAAAGIGEAL
LTTAAGMVVAILALIVLRIFVILQARQVDTFSEVGSEMELIYRQVWYEPNQVNRPAYLPKGSSVEPTQVTLETL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates. Protects exbD from proteolytic degradation and functionally stabilizes tonB [H]

COG id: COG0811

COG function: function code U; Biopolymer transport proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbB/tolQ family [H]

Homologues:

Organism=Escherichia coli, GI1789381, Length=193, Percent_Identity=33.160621761658, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 25586; Mature: 25455

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00053 RIBOSOMAL_S8

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIYTFLAKGGPVMIPIAGLSVLTLACAFERTIFWIRLISQEHRIVHDVLDAARCSLEE
CCHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AEAIAQHARFLPIGRFLLAPLRLHQPSPETFRLALEAAADKEFVRMRKGDKLLETTVAVA
HHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PLMGLLGTVTGLINTFNNLNIGSGGTSEQATKAAAGIGEALLTTAAGMVVAILALIVLRI
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVILQARQVDTFSEVGSEMELIYRQVWYEPNQVNRPAYLPKGSSVEPTQVTLETL
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure 
STIYTFLAKGGPVMIPIAGLSVLTLACAFERTIFWIRLISQEHRIVHDVLDAARCSLEE
CHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
AEAIAQHARFLPIGRFLLAPLRLHQPSPETFRLALEAAADKEFVRMRKGDKLLETTVAVA
HHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
PLMGLLGTVTGLINTFNNLNIGSGGTSEQATKAAAGIGEALLTTAAGMVVAILALIVLRI
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVILQARQVDTFSEVGSEMELIYRQVWYEPNQVNRPAYLPKGSSVEPTQVTLETL
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]