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The map label for this gene is yodJ [H]

Identifier: 158333379

GI number: 158333379

Start: 151250

End: 151999

Strand: Direct

Name: yodJ [H]

Synonym: AM1_0151

Alternate gene names: 158333379

Gene position: 151250-151999 (Clockwise)

Preceding gene: 158333377

Following gene: 158333380

Centisome position: 2.33

GC content: 51.73

Gene sequence:

>750_bases
ATGTACGACGATATTCCAGAGGCCCGTCGGCAGGCCGTTCCAAAAACGGCGTCTTCACCTTCTCGAGGTAACCCTGCCCT
ATGGATTGGCAGTGGCATTGGATTGTTGGTGATTGCCGTTGGAGCCGCATTTGCAGTCGGTTTATTCAAGCCTGAACCCT
CCCAAAGCAAGGTAGAAACTAGCCCCACAGCATCCACCCCTCCAACAGGAGGAACGGAGGCCCCTAATACCCCAGATACG
ACCTTAGGGCATTTTTCCTACAAGGTGGCCCCAGAGAACGAATTGCAAGCCATCACCGCAGACAACCGGATTCGTTTACG
GTCATCTGCCGCTCGGGCCTACAAGCAAATGTCCGCAGCAGCAGCAGCAGATGGGATCAAGCTTCAGGCCCTTTCCGGGT
TTCGAACCGTAGAGGATCAAGATTACTTATTTTTTAGAGTGAAAGAAGAGCGGGCCCAAGGTGCCCAACAGCGAGCTAAA
GTCAGTGCTCCTCCTGGACGTAGCGAGCACCATACTGGCTACGCCATGGATATTGGCGATGCAACTCAGCCAAATACCCA
TGTAAATGTCACGTTTGAAGAGACTCGGGCCTTTGAGTGGCTGCAAAAAAATGCACCCCGGTATAGCTTTGAGTTATCCT
TCCCAAAAGGGAACTCCCAAGGGGTTAGTTATGAACCCTGGCACTGGCGTTATGTCGGTGACAAAGACAGTTTGGAGACC
TTCTACAACGCCCGAAATTTAAAATCCTAA

Upstream 100 bases:

>100_bases
TCTTCTGGGGGGAGCTGCAGATTCGTTTCCAAAATGAATCTTTTAGATTAGTCCCTTAGGAAATAATATTAAAATACTTA
TCTCTCTTGCTTAAGCCTTT

Downstream 100 bases:

>100_bases
CCCTTATGAATCAAACTCCTTTAAATGCGATCGCACTTTTCGTTGCCCTGCTCAGTGGTTCGATTCTGGTGGGTCCCATA
CTCCACATTGCCCCAGAGAT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MYDDIPEARRQAVPKTASSPSRGNPALWIGSGIGLLVIAVGAAFAVGLFKPEPSQSKVETSPTASTPPTGGTEAPNTPDT
TLGHFSYKVAPENELQAITADNRIRLRSSAARAYKQMSAAAAADGIKLQALSGFRTVEDQDYLFFRVKEERAQGAQQRAK
VSAPPGRSEHHTGYAMDIGDATQPNTHVNVTFEETRAFEWLQKNAPRYSFELSFPKGNSQGVSYEPWHWRYVGDKDSLET
FYNARNLKS

Sequences:

>Translated_249_residues
MYDDIPEARRQAVPKTASSPSRGNPALWIGSGIGLLVIAVGAAFAVGLFKPEPSQSKVETSPTASTPPTGGTEAPNTPDT
TLGHFSYKVAPENELQAITADNRIRLRSSAARAYKQMSAAAAADGIKLQALSGFRTVEDQDYLFFRVKEERAQGAQQRAK
VSAPPGRSEHHTGYAMDIGDATQPNTHVNVTFEETRAFEWLQKNAPRYSFELSFPKGNSQGVSYEPWHWRYVGDKDSLET
FYNARNLKS
>Mature_249_residues
MYDDIPEARRQAVPKTASSPSRGNPALWIGSGIGLLVIAVGAAFAVGLFKPEPSQSKVETSPTASTPPTGGTEAPNTPDT
TLGHFSYKVAPENELQAITADNRIRLRSSAARAYKQMSAAAAADGIKLQALSGFRTVEDQDYLFFRVKEERAQGAQQRAK
VSAPPGRSEHHTGYAMDIGDATQPNTHVNVTFEETRAFEWLQKNAPRYSFELSFPKGNSQGVSYEPWHWRYVGDKDSLET
FYNARNLKS

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27281; Mature: 27281

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDDIPEARRQAVPKTASSPSRGNPALWIGSGIGLLVIAVGAAFAVGLFKPEPSQSKVET
CCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEC
SPTASTPPTGGTEAPNTPDTTLGHFSYKVAPENELQAITADNRIRLRSSAARAYKQMSAA
CCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCEEEEECCCEEEEHHHHHHHHHHHHHH
AAADGIKLQALSGFRTVEDQDYLFFRVKEERAQGAQQRAKVSAPPGRSEHHTGYAMDIGD
HHHCCEEEEEECCCCCCCCCCEEEEEEEHHHHCCHHHHHCCCCCCCCCCCCCCEEEECCC
ATQPNTHVNVTFEETRAFEWLQKNAPRYSFELSFPKGNSQGVSYEPWHWRYVGDKDSLET
CCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
FYNARNLKS
HHHHHCCCC
>Mature Secondary Structure
MYDDIPEARRQAVPKTASSPSRGNPALWIGSGIGLLVIAVGAAFAVGLFKPEPSQSKVET
CCCCCHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEC
SPTASTPPTGGTEAPNTPDTTLGHFSYKVAPENELQAITADNRIRLRSSAARAYKQMSAA
CCCCCCCCCCCCCCCCCCCCEECCEEEEECCCCCEEEEECCCEEEEHHHHHHHHHHHHHH
AAADGIKLQALSGFRTVEDQDYLFFRVKEERAQGAQQRAKVSAPPGRSEHHTGYAMDIGD
HHHCCEEEEEECCCCCCCCCCEEEEEEEHHHHCCHHHHHCCCCCCCCCCCCCCEEEECCC
ATQPNTHVNVTFEETRAFEWLQKNAPRYSFELSFPKGNSQGVSYEPWHWRYVGDKDSLET
CCCCCCEEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCHHHHH
FYNARNLKS
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]