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The map label for this gene is ndhC

Identifier: 158333360

GI number: 158333360

Start: 131994

End: 132356

Strand: Direct

Name: ndhC

Synonym: AM1_0132

Alternate gene names: 158333360

Gene position: 131994-132356 (Clockwise)

Preceding gene: 158333359

Following gene: 158333361

Centisome position: 2.03

GC content: 47.93

Gene sequence:

>363_bases
ATGTTTGCTTTAAGCGGCTACGAATATCTATTAGGTTTCTTACTCCTGTGTAGCTTGGTCCCAGCCTTAGCCCTCAGTGC
ATCTAAAGTCCTTCGTCCCAGTAACCAAGGGGCCGTTCGGCGGACAACCTATGAATCCGGTATGGAGCCTGTCGGTGGAG
CTTGGATTCAATTCAACATTCGCTACTACATGTTTGCACTGGTTTTCGTCATTTTTGACGTAGAAACGGTCTTTCTCTAT
CCCTGGGCGGTAGCGTTCCATAAACTAGGTGTTTTGGCCTTTATCGAGGCTCTGATCTTTATTGCCATCCTGATTGTAGG
TTTGGTTTACGCCTGGCGAAAAGGAGCCTTGGAGTGGTCCTAG

Upstream 100 bases:

>100_bases
CAACATAGCCTTGGTTTATTTTCCTAAACCCGGGGAATAGGGAAGTCTGACCTTATAATGTTCTACAGAACTCGACGAGA
ACACATCCAACCTCTACTAT

Downstream 100 bases:

>100_bases
TTAGGTTGGATATCCACTCTTCCTCTTTCTAAAAACTTCTTCTTCATTTTCTAGTGCATATCAAAGGAGCAAACGGTGGC
AGATTCCTCTTCCGAATCAA

Product: NADH dehydrogenase subunit A

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit 3; NADH-plastoquinone oxidoreductase subunit 3; NDH-1 subunit 3; NDH-C

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS

Sequences:

>Translated_120_residues
MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS
>Mature_120_residues
MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNIRYYMFALVFVIFDVETVFLY
PWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0838

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 3 (chain A)

Gene ontology:
GO:0006810: NAD(P)H-quinone oxidoreductase subunit 3
GO:0008137: NAD(P)H-quinone oxidoreductase subunit 3
GO:0009579: NAD(P)H-quinone oxidoreductase subunit 3
GO:0016020: NAD(P)H-quinone oxidoreductase subunit 3
GO:0016021: NAD(P)H-quinone oxidoreductase subunit 3
GO:0016491: NAD(P)H-quinone oxidoreductase subunit 3
GO:0016651: NAD(P)H-quinone oxidoreductase subunit 3
GO:0042651: NAD(P)H-quinone oxidoreductase subunit 3
GO:0048038: NAD(P)H-quinone oxidoreductase subunit 3
GO:0055114: NAD(P)H-quinone oxidoreductase subunit 3

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 3 family

Homologues:

Organism=Escherichia coli, GI1788625, Length=81, Percent_Identity=41.9753086419753, Blast_Score=75, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NU3C_ACAM1 (B0C6C4)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001514532.1
- GeneID:   5678968
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_0132
- HOGENOM:   HBG605540
- OMA:   MFVLNGY
- ProtClustDB:   PRK06602
- BioCyc:   AMAR329726:AM1_0132-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01394
- InterPro:   IPR023043
- InterPro:   IPR000440
- PANTHER:   PTHR11058

Pfam domain/function: PF00507 Oxidored_q4

EC number: 1.6.5.3

Molecular weight: Translated: 13492; Mature: 13492

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x91f9ed4)-; HASH(0x21607dec)-; HASH(0x21607de0)-;

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MFALSGYEYLLGFLLLCSLVPALALSASKVLRPSNQGAVRRTTYESGMEPVGGAWIQFNI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCCCCCEEEEEHH
RYYMFALVFVIFDVETVFLYPWAVAFHKLGVLAFIEALIFIAILIVGLVYAWRKGALEWS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA