| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yczJ [H]
Identifier: 158319024
GI number: 158319024
Start: 8931620
End: 8931991
Strand: Reverse
Name: yczJ [H]
Synonym: Franean1_7307
Alternate gene names: 158319024
Gene position: 8931991-8931620 (Counterclockwise)
Preceding gene: 158319025
Following gene: 158319023
Centisome position: 99.44
GC content: 72.85
Gene sequence:
>372_bases ATGAGCGTTTCCGGTGTTCCCCCGCGCGACTCCGGGGTCGTCGAGGTCGCGCGGTTCGACGTGTTGCCAGGGTCCGAAGA GGAGTTCGCCGCGGCGTACCGAACCGTCCGGCACGAGCTGGTCGCCACGCCCGGGTGCCGCTCCGCCCGGATGACCAGGG GGGTCGAGTCCCCGTCCAGCTTCGTGCTCCTGGTCGACTGGGACAGCCTGGAAGCGCACACCGAGACCTTCCGCGGTTCC GACCGGTTCACCCGGTGGCGGGCGGCGCTCTCCCCGTTCTTCGCGGCCGCGCCGTCGGTGGAGCACGTCGTGGCGATCAC AGACCCCGTCGCGCCGGCACCGGCGTCGGCGGACCGGCCGGCCAGCTCCTGA
Upstream 100 bases:
>100_bases AGGGCGGCCGCCCGCTGCGGTCGGGTCGACTGGCCCGATCGGACTGGTCGGCGGGCCGACCGGCCTGAAGAGCCGGCCCC GCGGTGACAGACTGGGCGAC
Downstream 100 bases:
>100_bases GCCCGCCGGCCGTCGCGCGCCTCCGCCGCCATGATGACCTTCATCGGGTACCTCTTTCTGGCGCCCCTCTCGGCCGCGTT CTTCGGCTTTCTGGTGTGGC
Product: antibiotic biosynthesis monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSVSGVPPRDSGVVEVARFDVLPGSEEEFAAAYRTVRHELVATPGCRSARMTRGVESPSSFVLLVDWDSLEAHTETFRGS DRFTRWRAALSPFFAAAPSVEHVVAITDPVAPAPASADRPASS
Sequences:
>Translated_123_residues MSVSGVPPRDSGVVEVARFDVLPGSEEEFAAAYRTVRHELVATPGCRSARMTRGVESPSSFVLLVDWDSLEAHTETFRGS DRFTRWRAALSPFFAAAPSVEHVVAITDPVAPAPASADRPASS >Mature_122_residues SVSGVPPRDSGVVEVARFDVLPGSEEEFAAAYRTVRHELVATPGCRSARMTRGVESPSSFVLLVDWDSLEAHTETFRGSD RFTRWRAALSPFFAAAPSVEHVVAITDPVAPAPASADRPASS
Specific function: Unknown
COG id: COG2329
COG function: function code R; Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007138 - InterPro: IPR011008 [H]
Pfam domain/function: PF03992 ABM [H]
EC number: NA
Molecular weight: Translated: 13186; Mature: 13055
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVSGVPPRDSGVVEVARFDVLPGSEEEFAAAYRTVRHELVATPGCRSARMTRGVESPSS CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC FVLLVDWDSLEAHTETFRGSDRFTRWRAALSPFFAAAPSVEHVVAITDPVAPAPASADRP EEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC ASS CCC >Mature Secondary Structure SVSGVPPRDSGVVEVARFDVLPGSEEEFAAAYRTVRHELVATPGCRSARMTRGVESPSS CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC FVLLVDWDSLEAHTETFRGSDRFTRWRAALSPFFAAAPSVEHVVAITDPVAPAPASADRP EEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC ASS CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]