| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gsiB [H]
Identifier: 158318867
GI number: 158318867
Start: 8729171
End: 8730766
Strand: Reverse
Name: gsiB [H]
Synonym: Franean1_7148
Alternate gene names: 158318867
Gene position: 8730766-8729171 (Counterclockwise)
Preceding gene: 158318868
Following gene: 158318866
Centisome position: 97.2
GC content: 67.04
Gene sequence:
>1596_bases ATGACGCTCATGCCCATGGAAGGGTGGAAGATGAATCGTGGGACGCGATTATTCGTCACCGCTGCCGCATGCTGTGCGGC GCTCCTCCTGGGGGCCTGCGGCGGCGGCGGCAGCGATCCCGCCACGTCCGCGGGGCCCTCGGGCGAGCCGGTGGCGGGTG GCGAAGGACGGGTTCTCACGCTGAGTGATCCGCGTACTCTGGATCCGGCGATCCTCGGCAACGCGTATGCGTCCGGCGCC TTCCTGGGCAACGCCCTGTACGGGACCCTGATGACCAACGATGAGGCAGACGAGGTCCATTACTCGATGGCCGAGTCGTT CACCACGACCGACAACGGCAAGACCTTCACCCTGAAGCTGCGGCCGGGCCTGGTGTTCTCCGACGGCACTCCGCTGAACA CCGAGGCCGTGAAGTTCAACTGGGACCGGACCAAGGACCCGGCCGTCGGCTCGGCCCACCGGTCGGAGGCGGCGACGATC GAGTCGTCCGAGGTGGTGGACGACGTCACGCTGAAGGTTACCCTGGTCACCCCCGTGCCGAGGTACGCCCTGTCCGTCCT CGCCTCCTCGATGAACTGGATCGCCTCACCCGCGGCCCTGCAGAAGGGCCAGCAGGCTTTCGACGCGAAGCCGATCGGCG CGGGACCGTTCACCCTGGAGAGCTGGACCCGTCAGGCCGACATCCGGCTCGTCAAGAACCCCCGCTACTGGGACGCGCCC AAGCCCTACCTCGACCGCCTCACCCTCCGCGCGGCGCTCGAAGGCAACCAGCGCTACAACACGCTGCTCACCGGGGGCGC GGACGTGGCCATCGACTCGAGCTGGATCAACCTCGACAAGGCCACCAAGGCGGGTCTGCCGAAAAATGTCATGCGGCTCA GCGGCGGCGTCTTCGCAGCGCTGAACATGCGCAGAGCACCGTTCGACGACATTCGTGCGCGTCGGGCGCTCGCGGCGGCA CTGGACTCGGACGCGCTGAACCTCGCAGCGTACAACGGCACCGCGCAGCTGGCCGATACGTTGTTCACCGACGCCTCCCC CTTCTACTCGGAGACGCCGCTGCGCAAGACGGACAAGGCGACCGCCCAGCGGCTCTTCGACGAGCTGGCCGCCGAAGGCA AGCCACTGACCTTCACGTTCACCAGCTCCACCGCCAGCGAGAACAAGGCGCTTGCGGAGAACATCCAGGCCCAGCTCAGC GCCTTCAGGAACGTCAAGGTCCAAATTAAGACCATTGAGCTCGCCGAGTTCGTCCAGCTGCGCAGGACGCTCGACTTCGA CGCGGTTATCACGTCCGCGCTCTTCCAGGACCCCGAGCCTCGGTTGTCGACGGTTTTCGCCGGGGGCTCGCCGGCGAACC TGGCCGGTATCAACGACCCGGCGCTCAACGCGGCCCTGCAGACCGGCCGGACCGCGACCTCGGAGGAGGAGCGCAAGGCG GCCTACGACACCGTGCAGGAACGGCTGACCGAACTGACCCCGATGTTCTTCATCGCGCGTGGGGGGCTCGGCGCCATCTC GGGCAAGAACGTCGGCGGCCTCGTGCAGTACGGCCTTGGTTCCCTGCTTCCCGAGGAACTGTGGATCCAGCCGTAA
Upstream 100 bases:
>100_bases TGCTACGGGCAAAGAGTTGACCGAATGCGCAAAGACCTCCACGGTCCCACCGCCGATGATGTGTCGAGACGGCATCGCCG GTAAATCCAGGAGGGCAGGG
Downstream 100 bases:
>100_bases CCGTCCACCCTGGATGAGAGGTCGCCGTAGCCCACGGACGCTGGGGCGATCTCCCAGACTCGGACCAGGCTCGGCACCGG GGGGAGGGTCCCTGGCCGGC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MTLMPMEGWKMNRGTRLFVTAAACCAALLLGACGGGGSDPATSAGPSGEPVAGGEGRVLTLSDPRTLDPAILGNAYASGA FLGNALYGTLMTNDEADEVHYSMAESFTTTDNGKTFTLKLRPGLVFSDGTPLNTEAVKFNWDRTKDPAVGSAHRSEAATI ESSEVVDDVTLKVTLVTPVPRYALSVLASSMNWIASPAALQKGQQAFDAKPIGAGPFTLESWTRQADIRLVKNPRYWDAP KPYLDRLTLRAALEGNQRYNTLLTGGADVAIDSSWINLDKATKAGLPKNVMRLSGGVFAALNMRRAPFDDIRARRALAAA LDSDALNLAAYNGTAQLADTLFTDASPFYSETPLRKTDKATAQRLFDELAAEGKPLTFTFTSSTASENKALAENIQAQLS AFRNVKVQIKTIELAEFVQLRRTLDFDAVITSALFQDPEPRLSTVFAGGSPANLAGINDPALNAALQTGRTATSEEERKA AYDTVQERLTELTPMFFIARGGLGAISGKNVGGLVQYGLGSLLPEELWIQP
Sequences:
>Translated_531_residues MTLMPMEGWKMNRGTRLFVTAAACCAALLLGACGGGGSDPATSAGPSGEPVAGGEGRVLTLSDPRTLDPAILGNAYASGA FLGNALYGTLMTNDEADEVHYSMAESFTTTDNGKTFTLKLRPGLVFSDGTPLNTEAVKFNWDRTKDPAVGSAHRSEAATI ESSEVVDDVTLKVTLVTPVPRYALSVLASSMNWIASPAALQKGQQAFDAKPIGAGPFTLESWTRQADIRLVKNPRYWDAP KPYLDRLTLRAALEGNQRYNTLLTGGADVAIDSSWINLDKATKAGLPKNVMRLSGGVFAALNMRRAPFDDIRARRALAAA LDSDALNLAAYNGTAQLADTLFTDASPFYSETPLRKTDKATAQRLFDELAAEGKPLTFTFTSSTASENKALAENIQAQLS AFRNVKVQIKTIELAEFVQLRRTLDFDAVITSALFQDPEPRLSTVFAGGSPANLAGINDPALNAALQTGRTATSEEERKA AYDTVQERLTELTPMFFIARGGLGAISGKNVGGLVQYGLGSLLPEELWIQP >Mature_530_residues TLMPMEGWKMNRGTRLFVTAAACCAALLLGACGGGGSDPATSAGPSGEPVAGGEGRVLTLSDPRTLDPAILGNAYASGAF LGNALYGTLMTNDEADEVHYSMAESFTTTDNGKTFTLKLRPGLVFSDGTPLNTEAVKFNWDRTKDPAVGSAHRSEAATIE SSEVVDDVTLKVTLVTPVPRYALSVLASSMNWIASPAALQKGQQAFDAKPIGAGPFTLESWTRQADIRLVKNPRYWDAPK PYLDRLTLRAALEGNQRYNTLLTGGADVAIDSSWINLDKATKAGLPKNVMRLSGGVFAALNMRRAPFDDIRARRALAAAL DSDALNLAAYNGTAQLADTLFTDASPFYSETPLRKTDKATAQRLFDELAAEGKPLTFTFTSSTASENKALAENIQAQLSA FRNVKVQIKTIELAEFVQLRRTLDFDAVITSALFQDPEPRLSTVFAGGSPANLAGINDPALNAALQTGRTATSEEERKAA YDTVQERLTELTPMFFIARGGLGAISGKNVGGLVQYGLGSLLPEELWIQP
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=411, Percent_Identity=27.7372262773723, Blast_Score=136, Evalue=4e-33, Organism=Escherichia coli, GI1787495, Length=543, Percent_Identity=24.1252302025783, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1789397, Length=504, Percent_Identity=25.1984126984127, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1789966, Length=476, Percent_Identity=24.5798319327731, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87081878, Length=515, Percent_Identity=23.8834951456311, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787762, Length=475, Percent_Identity=25.0526315789474, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI1789887, Length=475, Percent_Identity=25.2631578947368, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1787551, Length=461, Percent_Identity=24.295010845987, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56701; Mature: 56569
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLMPMEGWKMNRGTRLFVTAAACCAALLLGACGGGGSDPATSAGPSGEPVAGGEGRVLT CCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LSDPRTLDPAILGNAYASGAFLGNALYGTLMTNDEADEVHYSMAESFTTTDNGKTFTLKL ECCCCCCCHHHHCCCHHCCHHHHHHHEEEEECCCCHHHHHHHHHHHCEECCCCCEEEEEE RPGLVFSDGTPLNTEAVKFNWDRTKDPAVGSAHRSEAATIESSEVVDDVTLKVTLVTPVP CCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHCCEEEEEEEECCCH RYALSVLASSMNWIASPAALQKGQQAFDAKPIGAGPFTLESWTRQADIRLVKNPRYWDAP HHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCC KPYLDRLTLRAALEGNQRYNTLLTGGADVAIDSSWINLDKATKAGLPKNVMRLSGGVFAA CHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCEECCCHHHHCCCCHHHHHHCCCEEEE LNMRRAPFDDIRARRALAAALDSDALNLAAYNGTAQLADTLFTDASPFYSETPLRKTDKA ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHH TAQRLFDELAAEGKPLTFTFTSSTASENKALAENIQAQLSAFRNVKVQIKTIELAEFVQL HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHH RRTLDFDAVITSALFQDPEPRLSTVFAGGSPANLAGINDPALNAALQTGRTATSEEERKA HHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHH AYDTVQERLTELTPMFFIARGGLGAISGKNVGGLVQYGLGSLLPEELWIQP HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCC >Mature Secondary Structure TLMPMEGWKMNRGTRLFVTAAACCAALLLGACGGGGSDPATSAGPSGEPVAGGEGRVLT CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE LSDPRTLDPAILGNAYASGAFLGNALYGTLMTNDEADEVHYSMAESFTTTDNGKTFTLKL ECCCCCCCHHHHCCCHHCCHHHHHHHEEEEECCCCHHHHHHHHHHHCEECCCCCEEEEEE RPGLVFSDGTPLNTEAVKFNWDRTKDPAVGSAHRSEAATIESSEVVDDVTLKVTLVTPVP CCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHHCCEEEEEEEECCCH RYALSVLASSMNWIASPAALQKGQQAFDAKPIGAGPFTLESWTRQADIRLVKNPRYWDAP HHHHHHHHHHHHHHCCCHHHHCCHHHHCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCC KPYLDRLTLRAALEGNQRYNTLLTGGADVAIDSSWINLDKATKAGLPKNVMRLSGGVFAA CHHHHHHHHHHHHCCCCCEEEEEECCCCEEEECCEECCCHHHHCCCCHHHHHHCCCEEEE LNMRRAPFDDIRARRALAAALDSDALNLAAYNGTAQLADTLFTDASPFYSETPLRKTDKA ECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCHHHH TAQRLFDELAAEGKPLTFTFTSSTASENKALAENIQAQLSAFRNVKVQIKTIELAEFVQL HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHH RRTLDFDAVITSALFQDPEPRLSTVFAGGSPANLAGINDPALNAALQTGRTATSEEERKA HHHCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHH AYDTVQERLTELTPMFFIARGGLGAISGKNVGGLVQYGLGSLLPEELWIQP HHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA