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The map label for this gene is rbsR [H]

Identifier: 158318782

GI number: 158318782

Start: 8607486

End: 8608538

Strand: Direct

Name: rbsR [H]

Synonym: Franean1_7053

Alternate gene names: 158318782

Gene position: 8607486-8608538 (Clockwise)

Preceding gene: 158318781

Following gene: 158318783

Centisome position: 95.83

GC content: 66.86

Gene sequence:

>1053_bases
ATGAGGAGCAACAGGGCAAGCATCCGTGACGTCGCCGCCGCCGCCGGTGTCTCCCAGACAACGGTTTCCCACGTTCTCAA
CAGGACCGAAGGTGCGCGGGTCGCCGAGGAAACCCGGGAACGGGTGCTCGAGGCAGCACAGCGGCTGGGCTACACGCCCA
GCCGACTGGCCCGGGGTCTGCGTCTGCGCCGGACGAACACCGTGGGCCTGATCAGCGACCACATAGCCACGACACCGCAC
GCGGGAAAAATTATTCTCGGTGTACAGGAAACCACACTCAAACACGGTCTGATACCGATGCTGTTCAACACCGGTGGCAG
TGCCGAGGCCGAGCAGCGTGCCGTGAAGGAACTCGTTCAGCGCCAGGTCGACGGGGTGCTCTACGCACGGATGTACCACA
GTCACGTCCAGCTTCCCCCCGGTCTGAGCGGGCTTCCCACGGTCCTGCTCGACGCGCGCTCCGACGACACGATGCCGGCT
GTCGTTCCCGACGAGTTCGGGGGCGGACGGGCGGCCGTCGAGGAACTGCTCCAGCACGGGCACACCCGGATCGGATTCAT
CACCAACCGTGATGACATTCCGGCCACGCACGGCCGGCTCGAGGGCTACCGGGCCGCTCTGAAGGACGCGGGCATCCGCT
ATGACCCACGTCTGGTCATCGCCGAGGAATCCGAGGCCACCGGTGGGTACATCGCCGCGCACGCACTGCTGACGCGGCGG
GGACGTCCCTCCGGGCTGTTCTGTTTCAACGACCGTATGGCGATGGGCGCCTACCGGGCCGCCGCGGAGCTCGGCCTGGA
GATCCCGCGTGACCTGTCGGTCGTGGGATTCGACAACCAGGAAATCATCGCCAACGGACTTCATCCCGGGCTGACCACCG
TCGCGCTGCCGCACTACGAGATGGGCTGCTGGGCCGCCGACACGCTGCTCGGTCTCATCGAGTCGTCGCAACCTCGGGCC
AGTGAGGGGTTTCCCCAGCTCATGTCGTGCCCGCTCGTTCGACGCGCTTCCGTCAGCCCGCCACCCCACCGGGTCTCCCG
GGTCTCCGGCTGA

Upstream 100 bases:

>100_bases
TGGCCGGAACACGGTCTCTGGGACGAGTAGACCGGTCCGGCGGCGCAGGGGGACAAACCCGGTCTGGCGCCAGGCGGGGA
AGAAGAGGTACGAAGGCGAC

Downstream 100 bases:

>100_bases
CCGGGCCCACAACCACCGCACAGGAAGGGCACGTGATGCTGCGACTCCCGGACGTCTGGACATGGGACTTCTGGTTCGCC
GACGACGGCGTGCACTACCA

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MRSNRASIRDVAAAAGVSQTTVSHVLNRTEGARVAEETRERVLEAAQRLGYTPSRLARGLRLRRTNTVGLISDHIATTPH
AGKIILGVQETTLKHGLIPMLFNTGGSAEAEQRAVKELVQRQVDGVLYARMYHSHVQLPPGLSGLPTVLLDARSDDTMPA
VVPDEFGGGRAAVEELLQHGHTRIGFITNRDDIPATHGRLEGYRAALKDAGIRYDPRLVIAEESEATGGYIAAHALLTRR
GRPSGLFCFNDRMAMGAYRAAAELGLEIPRDLSVVGFDNQEIIANGLHPGLTTVALPHYEMGCWAADTLLGLIESSQPRA
SEGFPQLMSCPLVRRASVSPPPHRVSRVSG

Sequences:

>Translated_350_residues
MRSNRASIRDVAAAAGVSQTTVSHVLNRTEGARVAEETRERVLEAAQRLGYTPSRLARGLRLRRTNTVGLISDHIATTPH
AGKIILGVQETTLKHGLIPMLFNTGGSAEAEQRAVKELVQRQVDGVLYARMYHSHVQLPPGLSGLPTVLLDARSDDTMPA
VVPDEFGGGRAAVEELLQHGHTRIGFITNRDDIPATHGRLEGYRAALKDAGIRYDPRLVIAEESEATGGYIAAHALLTRR
GRPSGLFCFNDRMAMGAYRAAAELGLEIPRDLSVVGFDNQEIIANGLHPGLTTVALPHYEMGCWAADTLLGLIESSQPRA
SEGFPQLMSCPLVRRASVSPPPHRVSRVSG
>Mature_350_residues
MRSNRASIRDVAAAAGVSQTTVSHVLNRTEGARVAEETRERVLEAAQRLGYTPSRLARGLRLRRTNTVGLISDHIATTPH
AGKIILGVQETTLKHGLIPMLFNTGGSAEAEQRAVKELVQRQVDGVLYARMYHSHVQLPPGLSGLPTVLLDARSDDTMPA
VVPDEFGGGRAAVEELLQHGHTRIGFITNRDDIPATHGRLEGYRAALKDAGIRYDPRLVIAEESEATGGYIAAHALLTRR
GRPSGLFCFNDRMAMGAYRAAAELGLEIPRDLSVVGFDNQEIIANGLHPGLTTVALPHYEMGCWAADTLLGLIESSQPRA
SEGFPQLMSCPLVRRASVSPPPHRVSRVSG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=325, Percent_Identity=35.0769230769231, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1787948, Length=349, Percent_Identity=33.810888252149, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI1790369, Length=341, Percent_Identity=31.3782991202346, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1789202, Length=342, Percent_Identity=31.2865497076023, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788474, Length=339, Percent_Identity=31.858407079646, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1789068, Length=339, Percent_Identity=29.2035398230088, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI48994940, Length=327, Percent_Identity=30.2752293577982, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786540, Length=344, Percent_Identity=29.3604651162791, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787580, Length=325, Percent_Identity=28, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790715, Length=326, Percent_Identity=26.6871165644172, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787906, Length=323, Percent_Identity=27.2445820433437, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1786268, Length=327, Percent_Identity=23.8532110091743, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790689, Length=318, Percent_Identity=26.1006289308176, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37805; Mature: 37805

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSNRASIRDVAAAAGVSQTTVSHVLNRTEGARVAEETRERVLEAAQRLGYTPSRLARGL
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCC
RLRRTNTVGLISDHIATTPHAGKIILGVQETTLKHGLIPMLFNTGGSAEAEQRAVKELVQ
EEECCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHH
RQVDGVLYARMYHSHVQLPPGLSGLPTVLLDARSDDTMPAVVPDEFGGGRAAVEELLQHG
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHCC
HTRIGFITNRDDIPATHGRLEGYRAALKDAGIRYDPRLVIAEESEATGGYIAAHALLTRR
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
GRPSGLFCFNDRMAMGAYRAAAELGLEIPRDLSVVGFDNQEIIANGLHPGLTTVALPHYE
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCCCEEECCCCC
MGCWAADTLLGLIESSQPRASEGFPQLMSCPLVRRASVSPPPHRVSRVSG
CCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MRSNRASIRDVAAAAGVSQTTVSHVLNRTEGARVAEETRERVLEAAQRLGYTPSRLARGL
CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCC
RLRRTNTVGLISDHIATTPHAGKIILGVQETTLKHGLIPMLFNTGGSAEAEQRAVKELVQ
EEECCCCEEEEHHHHCCCCCCCEEEEEEHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHH
RQVDGVLYARMYHSHVQLPPGLSGLPTVLLDARSDDTMPAVVPDEFGGGRAAVEELLQHG
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCHHHHHHHHHCC
HTRIGFITNRDDIPATHGRLEGYRAALKDAGIRYDPRLVIAEESEATGGYIAAHALLTRR
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHC
GRPSGLFCFNDRMAMGAYRAAAELGLEIPRDLSVVGFDNQEIIANGLHPGLTTVALPHYE
CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCCCCCEEECCCCC
MGCWAADTLLGLIESSQPRASEGFPQLMSCPLVRRASVSPPPHRVSRVSG
CCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]