| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is nodX [H]
Identifier: 158318681
GI number: 158318681
Start: 8466491
End: 8467927
Strand: Direct
Name: nodX [H]
Synonym: Franean1_6949
Alternate gene names: 158318681
Gene position: 8466491-8467927 (Clockwise)
Preceding gene: 158318680
Following gene: 158318683
Centisome position: 94.26
GC content: 74.6
Gene sequence:
>1437_bases GTGACGCACGCCAGCTCGGCCCGCGCCCCAGGCCGTCCCGGAGGCCCGCGCCACCGCAGGAAGCGGCACGGATGGCCCTG GGCGCCGCAGGGACCGTGGGGATGGCTGGCGACGCCCGGCGCGCGGACCCTGGGCCAGGCGTTCGATCCGCGGCACAACA ACCTCAACGCGCTCAGGCTCGTCCTGGCGGCGACCGTGCTGGTGTCGCACTCCTGGGGGTTCGTCCGGGACGAGGACGAC CCGCTCGGGAAGCTGACCGGCGGGCCGGAGGCGGGCGAGGTCGCCGTGGACGGATTCTTCCTGCTCAGCGGCTTCCTGAT CACTCGGAGTCGGCAACGGGCCCGCTCGACCGGACGTTTCCTGTGGCACCGCCTGCTGCGGATCCTGCCCGGCTTCTGGG TCTGCCTCGCCGTGACCGCGGTGATCCTCGGGCCGCTGCTGTGGCTACTCGAACGGGACACCCTGGCCGGCTATCCCTGG ACGGGCGCCGACTCGGCGCTGACCTACGTCGCAGCCAACGCCCTGCTGCGGATGCACCAGTTCAACATCGGCGACCTCAA CGGCGGCGGCGCGCTCAACGGCTCCCTGCACACCCTCTTCTTCGAGGTGCTGTGCTACCTGATGATCGGGGTCCTCGGGG CGATGGGGCTGCTGCGCCGGCGCCGGGCAGCCGTCCTCGCCCTGGCCGCCGCCTGCTGGGTGCTCGCCGCCGCGGACACC GTCTCCGGCGCGGACCGCCTCGCCGACGCCTACGCGCTCCGCTTCGCCTCGATGTTCCTCGTCGGCGCGGTGATGTTCCT CTACGCCGACCGCATCCCGCTGAACCGGCCGCTGCTCGCCGCGAGCTGCTGCCTGCTCGCCATCGCCCTCGCGGCTCCCG CCGCCTACCTGCCCCTCGCGCCCGCGCCGCTGGCCTACTTCCTGCTATGGGCGGGCACCGGACGTCGTCTCATGCGGGTC GGGAGCCGGCGGGACCTCTCCTACGGCATCTACGTCTACTCGTGGCCGCTGCAGCTCCTCCTGCTCGAGCTCGGCGTCGG CGACGACAGCGTCGCCGTCAACATCGTCGCCTCGATCGGCCTCTCCGCGGCGGTCGCGGTCGCCAGCTGGCACCTCGTCG AATCGCCCGCGCTCGCCCTCAAGTCGGCGGCGGCGCCGTCCTGGCTGGGAGGGTTCCTCTCCCGGCCCGCGGCACGCCCC GGGGGACGGCCTACGCGCCCGGCGGACTCGGCGTCCCCGATGGGCTCACCGTCCCCGATGGGCTCGGTGCCGGGCGCCGC CGCGGGTGCCGCGCCGGGCGGGCACCGGACGTACAGCGCGGTGCCGGGGATGCCCGTGTCGGCTGGGCCGGTGCGCCCGC CTGGCTCGGATCCTCTGAGGCGCTCCCGGCCCGCGGCCGTGCCCGACCAGCGGCGCACCCGCCACGCGTCGAGGTGA
Upstream 100 bases:
>100_bases GCCTGCCCGAGATGGACGCGGAGGGTAGTCCTCTGGATGCGGTGGCGTCGGGAACGCCGTCCAGGGCGCGGCTGGGCCGA GCCTCGAGAGGACACGAGAC
Downstream 100 bases:
>100_bases GAACCGGCGGAACCGCCGGCACCGCCACGGACGGAGCCGCCGGCACGGCCGCGGGCGGTTCCGACCCGGGGCGGGCCTTC GACGGGAACCTGCCGTTGAA
Product: acyltransferase 3
Products: NA
Alternate protein names: Nodulation protein X; Probable sugar acetylase [H]
Number of amino acids: Translated: 478; Mature: 477
Protein sequence:
>478_residues MTHASSARAPGRPGGPRHRRKRHGWPWAPQGPWGWLATPGARTLGQAFDPRHNNLNALRLVLAATVLVSHSWGFVRDEDD PLGKLTGGPEAGEVAVDGFFLLSGFLITRSRQRARSTGRFLWHRLLRILPGFWVCLAVTAVILGPLLWLLERDTLAGYPW TGADSALTYVAANALLRMHQFNIGDLNGGGALNGSLHTLFFEVLCYLMIGVLGAMGLLRRRRAAVLALAAACWVLAAADT VSGADRLADAYALRFASMFLVGAVMFLYADRIPLNRPLLAASCCLLAIALAAPAAYLPLAPAPLAYFLLWAGTGRRLMRV GSRRDLSYGIYVYSWPLQLLLLELGVGDDSVAVNIVASIGLSAAVAVASWHLVESPALALKSAAAPSWLGGFLSRPAARP GGRPTRPADSASPMGSPSPMGSVPGAAAGAAPGGHRTYSAVPGMPVSAGPVRPPGSDPLRRSRPAAVPDQRRTRHASR
Sequences:
>Translated_478_residues MTHASSARAPGRPGGPRHRRKRHGWPWAPQGPWGWLATPGARTLGQAFDPRHNNLNALRLVLAATVLVSHSWGFVRDEDD PLGKLTGGPEAGEVAVDGFFLLSGFLITRSRQRARSTGRFLWHRLLRILPGFWVCLAVTAVILGPLLWLLERDTLAGYPW TGADSALTYVAANALLRMHQFNIGDLNGGGALNGSLHTLFFEVLCYLMIGVLGAMGLLRRRRAAVLALAAACWVLAAADT VSGADRLADAYALRFASMFLVGAVMFLYADRIPLNRPLLAASCCLLAIALAAPAAYLPLAPAPLAYFLLWAGTGRRLMRV GSRRDLSYGIYVYSWPLQLLLLELGVGDDSVAVNIVASIGLSAAVAVASWHLVESPALALKSAAAPSWLGGFLSRPAARP GGRPTRPADSASPMGSPSPMGSVPGAAAGAAPGGHRTYSAVPGMPVSAGPVRPPGSDPLRRSRPAAVPDQRRTRHASR >Mature_477_residues THASSARAPGRPGGPRHRRKRHGWPWAPQGPWGWLATPGARTLGQAFDPRHNNLNALRLVLAATVLVSHSWGFVRDEDDP LGKLTGGPEAGEVAVDGFFLLSGFLITRSRQRARSTGRFLWHRLLRILPGFWVCLAVTAVILGPLLWLLERDTLAGYPWT GADSALTYVAANALLRMHQFNIGDLNGGGALNGSLHTLFFEVLCYLMIGVLGAMGLLRRRRAAVLALAAACWVLAAADTV SGADRLADAYALRFASMFLVGAVMFLYADRIPLNRPLLAASCCLLAIALAAPAAYLPLAPAPLAYFLLWAGTGRRLMRVG SRRDLSYGIYVYSWPLQLLLLELGVGDDSVAVNIVASIGLSAAVAVASWHLVESPALALKSAAAPSWLGGFLSRPAARPG GRPTRPADSASPMGSPSPMGSVPGAAAGAAPGGHRTYSAVPGMPVSAGPVRPPGSDPLRRSRPAAVPDQRRTRHASR
Specific function: Not known. NodX allows Rhizobium leguminosarum biovar viciae strain TOM to nodulate Afghanistan peas [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyltransferase 3 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002656 [H]
Pfam domain/function: PF01757 Acyl_transf_3 [H]
EC number: NA
Molecular weight: Translated: 50682; Mature: 50551
Theoretical pI: Translated: 11.48; Mature: 11.48
Prosite motif: PS00306 CASEIN_ALPHA_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHASSARAPGRPGGPRHRRKRHGWPWAPQGPWGWLATPGARTLGQAFDPRHNNLNALRL CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHH VLAATVLVSHSWGFVRDEDDPLGKLTGGPEAGEVAVDGFFLLSGFLITRSRQRARSTGRF HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LWHRLLRILPGFWVCLAVTAVILGPLLWLLERDTLAGYPWTGADSALTYVAANALLRMHQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH FNIGDLNGGGALNGSLHTLFFEVLCYLMIGVLGAMGLLRRRRAAVLALAAACWVLAAADT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSGADRLADAYALRFASMFLVGAVMFLYADRIPLNRPLLAASCCLLAIALAAPAAYLPLA HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCC PAPLAYFLLWAGTGRRLMRVGSRRDLSYGIYVYSWPLQLLLLELGVGDDSVAVNIVASIG CHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHH LSAAVAVASWHLVESPALALKSAAAPSWLGGFLSRPAARPGGRPTRPADSASPMGSPSPM HHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GSVPGAAAGAAPGGHRTYSAVPGMPVSAGPVRPPGSDPLRRSRPAAVPDQRRTRHASR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCCCC >Mature Secondary Structure THASSARAPGRPGGPRHRRKRHGWPWAPQGPWGWLATPGARTLGQAFDPRHNNLNALRL CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHH VLAATVLVSHSWGFVRDEDDPLGKLTGGPEAGEVAVDGFFLLSGFLITRSRQRARSTGRF HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LWHRLLRILPGFWVCLAVTAVILGPLLWLLERDTLAGYPWTGADSALTYVAANALLRMHQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH FNIGDLNGGGALNGSLHTLFFEVLCYLMIGVLGAMGLLRRRRAAVLALAAACWVLAAADT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSGADRLADAYALRFASMFLVGAVMFLYADRIPLNRPLLAASCCLLAIALAAPAAYLPLA HCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCC PAPLAYFLLWAGTGRRLMRVGSRRDLSYGIYVYSWPLQLLLLELGVGDDSVAVNIVASIG CHHHHHHHHHCCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHH LSAAVAVASWHLVESPALALKSAAAPSWLGGFLSRPAARPGGRPTRPADSASPMGSPSPM HHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GSVPGAAAGAAPGGHRTYSAVPGMPVSAGPVRPPGSDPLRRSRPAAVPDQRRTRHASR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3419422 [H]