| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318664
Identifier: 158318664
GI number: 158318664
Start: 8444335
End: 8445906
Strand: Reverse
Name: 158318664
Synonym: Franean1_6932
Alternate gene names: NA
Gene position: 8445906-8444335 (Counterclockwise)
Preceding gene: 158318665
Following gene: 158318660
Centisome position: 94.03
GC content: 72.71
Gene sequence:
>1572_bases ATGCTGGTTCAGAAGAATTCGGTGCCGGACAAAGTGGATCTCGCTTCCGATTTCTCTGGAGAGCTGGAGGCCGGGGCGAC GGAGAAGCAGCCGGCCCCGGAACTCCATCTGGACAACCGGGAGACCGTGGAGACGCACACTGCGATCCTTTTCCTGACCG AGGACCGCGTTTACAAGCTGCGCAAGCCGGTCGACCTCGGCTTCGTGGATCTCCGCACCCGGCACGCGCGGCTCACGGCC TGCGAGGACGAGGTGCGTCTCAACCGGCGGCTGGCCCCGGACGTGTACCTCGGCGTCGCCGACATCCGGGACGAAGAGGG TCACCCGCGCGACCACATGGTCGTGATGCGCCGGATGCCCGCCGACCGCCGGCTGTCGGAGCTGGTGCGCGGCGGCGCCG ACCTGACCGGCGAGCTGCGCGTGATCGCCCGCACGATGGCGGCGTTCCACGAGCGGTGCGAGACCTCACCGGAGATCTCC CGGGCCGGTGGGCTCGCCAACCTGGAGGCGCTGTGGCTGGAGGCGATGGACGCCGTCGCGCCCTTCCGCGGCTCGATCCT GGACGCCGGCACCGTCGACGAGATCGGCCGGCTGGCCCTGCGGTACCTGGCCGGCCGGGCGCCCCTGCTGGCGGAGCGGC AGCGCGCCGGGCGGATCCGCGACGGGCACGGTGACCTGCTCGCCGACGACATCTACTGCCTGGACGACGGCCCGCGGGTG CTGGACTGCATCAACTTCGACCGCCGGCTGCGGGTCGGTGACGTCCTCGCCGACGTCGCGTTCCTCGCGATGGACCTGGA GCGGCTCGGCGCCCCGGCGGCGGCCCGGACGTTCCTCGACGCGTACCGGGAGTTCTCCGGCGAGACCCATCCGGCGTCCC TGGAGCACCTCTACATCGCCTACCGGGCGTTCGTCCGGGTGCGCATCGCGTGCATCCGCGACCACCAGGGCGATCCGGAG GCCGCCGAGGAGGCTCGCCGGCTCGCCGACATCGCGCTGGCGCATCTCCGCCGGGGCCGGGTGCGGCTGGTGCTGGTCGG CGGGCTGCCCGGCACGGGCAAGTCGACGCTGGCGAGCGGCCTGGCCGACGGGCAGGACGAATGGGTGCTGCTGCGCTCGG ACGTGGTGCGCAAGGAACTGGCCGGACTGGCCCCGGACATCGCGGTCGACGTCGCCCCCGGTGCGGGGATCTACGGTGTC GAGGCGACCGAGCACAGCTACGCCGAGTTGATCGCGAGGGCGCGGCAGGCGCTGGAGCGCGGCCAGAGCGTCGTGCTCGA CGCATCCTGGTCCTCCGGGCTGTTCCGGGAACTCGCTGCCGAAACCGCGAAGGCGACCGGCGCCGACCTGGCGCAGGTGC GCTGTGTGGCCCCGGCGCCGGTCGCCGTCGCCCGCATCGAGTCCCGGCGGTCCATGCGGGCTCGCGGGACCGGTGCGGAC GCCTCGGACGCGACGGGCGTGATTCACGCGGCGATGGCCGATCGCGCCGACCTCTGGCCGGCCGCGTTCGAGATCGACAC CACGGGGTCTGTCGAGGAGACGGTCGCTGCCGCCCGGCGGGTCGTCGACTGA
Upstream 100 bases:
>100_bases ATGACGGACGATCCCGGAGCCCGGACCACTCGGCCGGCACCGGTGAACCACACGTCGATGGTCGTGGCGATATCGTCCCG AAAACGTCTGGAGACGTCGG
Downstream 100 bases:
>100_bases CACCCGGGCGGTGCCCGGCGTCGCCGCTGAGTTTCAGGCGGCGCTTGGCGCCGCCGTCCCCCGAAGGGGTTCACCGACCG ACGCACCGGTGGACGCGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 523
Protein sequence:
>523_residues MLVQKNSVPDKVDLASDFSGELEAGATEKQPAPELHLDNRETVETHTAILFLTEDRVYKLRKPVDLGFVDLRTRHARLTA CEDEVRLNRRLAPDVYLGVADIRDEEGHPRDHMVVMRRMPADRRLSELVRGGADLTGELRVIARTMAAFHERCETSPEIS RAGGLANLEALWLEAMDAVAPFRGSILDAGTVDEIGRLALRYLAGRAPLLAERQRAGRIRDGHGDLLADDIYCLDDGPRV LDCINFDRRLRVGDVLADVAFLAMDLERLGAPAAARTFLDAYREFSGETHPASLEHLYIAYRAFVRVRIACIRDHQGDPE AAEEARRLADIALAHLRRGRVRLVLVGGLPGTGKSTLASGLADGQDEWVLLRSDVVRKELAGLAPDIAVDVAPGAGIYGV EATEHSYAELIARARQALERGQSVVLDASWSSGLFRELAAETAKATGADLAQVRCVAPAPVAVARIESRRSMRARGTGAD ASDATGVIHAAMADRADLWPAAFEIDTTGSVEETVAAARRVVD
Sequences:
>Translated_523_residues MLVQKNSVPDKVDLASDFSGELEAGATEKQPAPELHLDNRETVETHTAILFLTEDRVYKLRKPVDLGFVDLRTRHARLTA CEDEVRLNRRLAPDVYLGVADIRDEEGHPRDHMVVMRRMPADRRLSELVRGGADLTGELRVIARTMAAFHERCETSPEIS RAGGLANLEALWLEAMDAVAPFRGSILDAGTVDEIGRLALRYLAGRAPLLAERQRAGRIRDGHGDLLADDIYCLDDGPRV LDCINFDRRLRVGDVLADVAFLAMDLERLGAPAAARTFLDAYREFSGETHPASLEHLYIAYRAFVRVRIACIRDHQGDPE AAEEARRLADIALAHLRRGRVRLVLVGGLPGTGKSTLASGLADGQDEWVLLRSDVVRKELAGLAPDIAVDVAPGAGIYGV EATEHSYAELIARARQALERGQSVVLDASWSSGLFRELAAETAKATGADLAQVRCVAPAPVAVARIESRRSMRARGTGAD ASDATGVIHAAMADRADLWPAAFEIDTTGSVEETVAAARRVVD >Mature_523_residues MLVQKNSVPDKVDLASDFSGELEAGATEKQPAPELHLDNRETVETHTAILFLTEDRVYKLRKPVDLGFVDLRTRHARLTA CEDEVRLNRRLAPDVYLGVADIRDEEGHPRDHMVVMRRMPADRRLSELVRGGADLTGELRVIARTMAAFHERCETSPEIS RAGGLANLEALWLEAMDAVAPFRGSILDAGTVDEIGRLALRYLAGRAPLLAERQRAGRIRDGHGDLLADDIYCLDDGPRV LDCINFDRRLRVGDVLADVAFLAMDLERLGAPAAARTFLDAYREFSGETHPASLEHLYIAYRAFVRVRIACIRDHQGDPE AAEEARRLADIALAHLRRGRVRLVLVGGLPGTGKSTLASGLADGQDEWVLLRSDVVRKELAGLAPDIAVDVAPGAGIYGV EATEHSYAELIARARQALERGQSVVLDASWSSGLFRELAAETAKATGADLAQVRCVAPAPVAVARIESRRSMRARGTGAD ASDATGVIHAAMADRADLWPAAFEIDTTGSVEETVAAARRVVD
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 56913; Mature: 56913
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVQKNSVPDKVDLASDFSGELEAGATEKQPAPELHLDNRETVETHTAILFLTEDRVYKL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHH RKPVDLGFVDLRTRHARLTACEDEVRLNRRLAPDVYLGVADIRDEEGHPRDHMVVMRRMP CCCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCHHEEEHHHCCCCCCCCHHHHHHHHHCC ADRRLSELVRGGADLTGELRVIARTMAAFHERCETSPEISRAGGLANLEALWLEAMDAVA CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHC PFRGSILDAGTVDEIGRLALRYLAGRAPLLAERQRAGRIRDGHGDLLADDIYCLDDGPRV CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEECCEEEECCCCCE LDCINFDRRLRVGDVLADVAFLAMDLERLGAPAAARTFLDAYREFSGETHPASLEHLYIA EHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH YRAFVRVRIACIRDHQGDPEAAEEARRLADIALAHLRRGRVRLVLVGGLPGTGKSTLASG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH LADGQDEWVLLRSDVVRKELAGLAPDIAVDVAPGAGIYGVEATEHSYAELIARARQALER CCCCCCCEEEHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHC GQSVVLDASWSSGLFRELAAETAKATGADLAQVRCVAPAPVAVARIESRRSMRARGTGAD CCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCCCCCC ASDATGVIHAAMADRADLWPAAFEIDTTGSVEETVAAARRVVD CCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCC >Mature Secondary Structure MLVQKNSVPDKVDLASDFSGELEAGATEKQPAPELHLDNRETVETHTAILFLTEDRVYKL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHH RKPVDLGFVDLRTRHARLTACEDEVRLNRRLAPDVYLGVADIRDEEGHPRDHMVVMRRMP CCCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCHHEEEHHHCCCCCCCCHHHHHHHHHCC ADRRLSELVRGGADLTGELRVIARTMAAFHERCETSPEISRAGGLANLEALWLEAMDAVA CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHC PFRGSILDAGTVDEIGRLALRYLAGRAPLLAERQRAGRIRDGHGDLLADDIYCLDDGPRV CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEECCEEEECCCCCE LDCINFDRRLRVGDVLADVAFLAMDLERLGAPAAARTFLDAYREFSGETHPASLEHLYIA EHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH YRAFVRVRIACIRDHQGDPEAAEEARRLADIALAHLRRGRVRLVLVGGLPGTGKSTLASG HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH LADGQDEWVLLRSDVVRKELAGLAPDIAVDVAPGAGIYGVEATEHSYAELIARARQALER CCCCCCCEEEHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHC GQSVVLDASWSSGLFRELAAETAKATGADLAQVRCVAPAPVAVARIESRRSMRARGTGAD CCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHEEECCCCCHHHHHHHHHHHHHHCCCCCC ASDATGVIHAAMADRADLWPAAFEIDTTGSVEETVAAARRVVD CCCCCHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]