BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is ucpA [C]

Identifier: 158318642

GI number: 158318642

Start: 8418886

End: 8419674

Strand: Direct

Name: ucpA [C]

Synonym: Franean1_6910

Alternate gene names: 158318642

Gene position: 8418886-8419674 (Clockwise)

Preceding gene: 158318641

Following gene: 158318644

Centisome position: 93.73

GC content: 67.05

Gene sequence:

>789_bases
ATGATGTGTAGACTGACGGCCATGGGTGAGCGTTTATCAGATTCCATTCCGGCGCGACGCCTCGAGGGGAAGGTCGCAGT
GGTCACCGGCGCGGGTTCCGGCATAGGCCGGGCCGCCGCCCTGCTGTTCGCGCGCGAGGGAGCGAGGGTGGTCTGCGCCG
ACCTCAGCGGCCGGGAGAAGGAAACCTCGACCATCATCGGTGAAGGCGCCGTTCCGGTACATGTCGACGTCACATCATCG
GCCGATGTGCAGAATATGATCGATACCGCCGTGCAGGAGTTCGGGCGGCTCGACGTGCTGTTCAACAACGCCGGCGGCGG
CGGCCCACGCAAACCGATCACCGAGTTCGACGAGGAGACCTTCGACAAGCTGATCGCGGTCAACCTCAAGGGCGTTTTCC
TCGGAATGAAGTACGGAATCGCCGCCATGCTGCGCGGCGACGGCGGTTCAGTCATCAACACCGCCTCGGCCGCCGGTCTC
GTCGGCTGGAAGGACCAGGCCATATATTCGGCGGCAAAAGGCGGGGTCGTCCAGATGACCAAGTCCGCGGCGCTGGACTT
CGCCGAGTCCGGCGTTCGGGTCAACGCCATCTGCCCGGGCATGACGTGGACGGGTCTGGCGCACGCGGCCGACGACTCCG
AGCCCCCCGTCGCCAACCTGCCCCAGCCGATGCGGCGCTGGGGCCGGCCGCAGGAGCTGGCGGCGGCCGCGCTGTTTCTC
GCCAGTGACGAGTCGTCGTTCGTCACCGGCACCGCCATCCCGGTGGACGGCGGGTACGTGGCCCGTTGA

Upstream 100 bases:

>100_bases
CGGGGGTTTTACCGGAGTTACCCCGCGCGGTTGACCGGACATCGCCGGCCTCTTCCCTCATGCCGCCCGGCTATTCGAGC
GGCATCTTTACCTCCGCGAC

Downstream 100 bases:

>100_bases
GTCGCGGCGCCGGCGGACGGATCGCCGCGGCGCCGGTGACGGGTCGCCCGTCCCACCGCGACCTGTCCGCCGGCCCGCGG
CCATCGCCTAACGCCCGCTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MMCRLTAMGERLSDSIPARRLEGKVAVVTGAGSGIGRAAALLFAREGARVVCADLSGREKETSTIIGEGAVPVHVDVTSS
ADVQNMIDTAVQEFGRLDVLFNNAGGGGPRKPITEFDEETFDKLIAVNLKGVFLGMKYGIAAMLRGDGGSVINTASAAGL
VGWKDQAIYSAAKGGVVQMTKSAALDFAESGVRVNAICPGMTWTGLAHAADDSEPPVANLPQPMRRWGRPQELAAAALFL
ASDESSFVTGTAIPVDGGYVAR

Sequences:

>Translated_262_residues
MMCRLTAMGERLSDSIPARRLEGKVAVVTGAGSGIGRAAALLFAREGARVVCADLSGREKETSTIIGEGAVPVHVDVTSS
ADVQNMIDTAVQEFGRLDVLFNNAGGGGPRKPITEFDEETFDKLIAVNLKGVFLGMKYGIAAMLRGDGGSVINTASAAGL
VGWKDQAIYSAAKGGVVQMTKSAALDFAESGVRVNAICPGMTWTGLAHAADDSEPPVANLPQPMRRWGRPQELAAAALFL
ASDESSFVTGTAIPVDGGYVAR
>Mature_262_residues
MMCRLTAMGERLSDSIPARRLEGKVAVVTGAGSGIGRAAALLFAREGARVVCADLSGREKETSTIIGEGAVPVHVDVTSS
ADVQNMIDTAVQEFGRLDVLFNNAGGGGPRKPITEFDEETFDKLIAVNLKGVFLGMKYGIAAMLRGDGGSVINTASAAGL
VGWKDQAIYSAAKGGVVQMTKSAALDFAESGVRVNAICPGMTWTGLAHAADDSEPPVANLPQPMRRWGRPQELAAAALFL
ASDESSFVTGTAIPVDGGYVAR

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=40, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI66933014, Length=248, Percent_Identity=35.0806451612903, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=34.1772151898734, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=30.078125, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI31542939, Length=206, Percent_Identity=35.4368932038835, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=36.9649805447471, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI32483357, Length=263, Percent_Identity=30.4182509505703, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI10190704, Length=264, Percent_Identity=30.6818181818182, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=30.0813008130081, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4504505, Length=258, Percent_Identity=31.3953488372093, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=34.5238095238095, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI5031737, Length=251, Percent_Identity=29.0836653386454, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI40807363, Length=226, Percent_Identity=30.9734513274336, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI224922801, Length=174, Percent_Identity=34.4827586206897, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI126723750, Length=263, Percent_Identity=28.1368821292776, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI142976729, Length=201, Percent_Identity=30.3482587064677, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI210032110, Length=219, Percent_Identity=26.4840182648402, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI310128830, Length=217, Percent_Identity=26.7281105990783, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI310115468, Length=217, Percent_Identity=26.7281105990783, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI225579078, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=29.8429319371728, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI209862901, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI19923983, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI40254986, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI109715829, Length=245, Percent_Identity=24.8979591836735, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI126723191, Length=217, Percent_Identity=28.110599078341, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=37.4501992031873, Blast_Score=134, Evalue=4e-33,
Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=35.9832635983264, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=35.6862745098039, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=34.5528455284553, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=33.1983805668016, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=32.3886639676113, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=30.0411522633745, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=31.8367346938775, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=33.7349397590361, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=32.6848249027237, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787526, Length=248, Percent_Identity=28.2258064516129, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=28.3950617283951, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=26.9662921348315, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=35.0393700787402, Blast_Score=127, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI71994604, Length=253, Percent_Identity=35.1778656126482, Blast_Score=127, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.6007604562738, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17555706, Length=266, Percent_Identity=36.4661654135338, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=32.824427480916, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=37.9032258064516, Blast_Score=123, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=33.8461538461538, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=32.5670498084291, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI17531453, Length=265, Percent_Identity=33.2075471698113, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.4600760456274, Blast_Score=117, Evalue=9e-27,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=31.640625, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=31.9230769230769, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=31.5384615384615, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=32.5757575757576, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=33.4586466165414, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=32.3076923076923, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=35.3174603174603, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI72000259, Length=258, Percent_Identity=31.0077519379845, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=30.5019305019305, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=31.5789473684211, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.2238805970149, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=31.0344827586207, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.4176245210728, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=31.4176245210728, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17564282, Length=207, Percent_Identity=31.8840579710145, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=29.0983606557377, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=29.4820717131474, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=31.0756972111554, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=32.4742268041237, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=29.718875502008, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI193203117, Length=210, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193203115, Length=211, Percent_Identity=28.436018957346, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=28.8557213930348, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=31.5384615384615, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71982365, Length=204, Percent_Identity=28.921568627451, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=207, Percent_Identity=29.4685990338164, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=250, Percent_Identity=30.8, Blast_Score=99, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=26.2948207171315, Blast_Score=77, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=253, Percent_Identity=27.6679841897233, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=36.3636363636364, Blast_Score=140, Evalue=8e-34,
Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=37.3983739837398, Blast_Score=132, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=36.4, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=33.7254901960784, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=32.1428571428571, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=34.1269841269841, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI17737361, Length=261, Percent_Identity=34.8659003831418, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.520325203252, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI18859837, Length=199, Percent_Identity=35.678391959799, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=34.5238095238095, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281364892, Length=215, Percent_Identity=28.8372093023256, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24640492, Length=201, Percent_Identity=25.8706467661692, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21357673, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355631, Length=165, Percent_Identity=29.6969696969697, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581726, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24665264, Length=196, Percent_Identity=31.1224489795918, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364494, Length=203, Percent_Identity=29.064039408867, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=27.6923076923077, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665243, Length=195, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221331216, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221331218, Length=195, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=25.5102040816327, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI22024069, Length=204, Percent_Identity=31.3725490196078, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27200; Mature: 27200

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMCRLTAMGERLSDSIPARRLEGKVAVVTGAGSGIGRAAALLFAREGARVVCADLSGREK
CEEEEHHHHHHHHHCCCHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCC
ETSTIIGEGAVPVHVDVTSSADVQNMIDTAVQEFGRLDVLFNNAGGGGPRKPITEFDEET
CCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCCHHH
FDKLIAVNLKGVFLGMKYGIAAMLRGDGGSVINTASAAGLVGWKDQAIYSAAKGGVVQMT
HHHEEEEEECEEEEEHHHCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCEEEEH
KSAALDFAESGVRVNAICPGMTWTGLAHAADDSEPPVANLPQPMRRWGRPQELAAAALFL
HHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHCCCHHHHHHHHHEE
ASDESSFVTGTAIPVDGGYVAR
ECCCCCEEEEEEEEECCCEECC
>Mature Secondary Structure
MMCRLTAMGERLSDSIPARRLEGKVAVVTGAGSGIGRAAALLFAREGARVVCADLSGREK
CEEEEHHHHHHHHHCCCHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCC
ETSTIIGEGAVPVHVDVTSSADVQNMIDTAVQEFGRLDVLFNNAGGGGPRKPITEFDEET
CCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCHHCCHHH
FDKLIAVNLKGVFLGMKYGIAAMLRGDGGSVINTASAAGLVGWKDQAIYSAAKGGVVQMT
HHHEEEEEECEEEEEHHHCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHHHCCCEEEEH
KSAALDFAESGVRVNAICPGMTWTGLAHAADDSEPPVANLPQPMRRWGRPQELAAAALFL
HHHHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCHHHHHCCCHHHHHHHHHEE
ASDESSFVTGTAIPVDGGYVAR
ECCCCCEEEEEEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10360571 [H]