| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318607
Identifier: 158318607
GI number: 158318607
Start: 8378869
End: 8379336
Strand: Reverse
Name: 158318607
Synonym: Franean1_6875
Alternate gene names: NA
Gene position: 8379336-8378869 (Counterclockwise)
Preceding gene: 158318608
Following gene: 158318606
Centisome position: 93.29
GC content: 69.44
Gene sequence:
>468_bases ATGACCGCACCGGCCCCCACCGCAGGCGGCCAGTTCGAGGGGTTCCTGCGGGATCTCGTCGACCAGCTCCGCGCCGGCGA CACCTACGGCAACCTCGACCGACTGCCCGACGCGCAGCTGATCAGCCCGTTCATTCTGACCCGCGAGCAGCGGCGGCAGA TCGCCTCCAACTGCGACATCGACGCCGTCATCGAGGGGCGCGTGCGCTCCTTCTACCAGGCCGTCGCCGCCTCGGTGGAG AAGACGACCGGGGTCATCACCACCACCGTGCTCGACCTCAACCACGAGGGCTTCGGCCGGGTGATCGTGTTCGGTGGGCG GCTGGTGGTGCTCTCCGACGTCCTGCGCGACGTCCAGCGCTTCGGCTTCAACTCGCTCGAGGATCTCGCCGCCCGTGGCG AGGCCATGGTCACCGCCGCCGCCAAGCTCGTCGACCAGTGGAGGGAGGTCGCCCGCGATGACTCCTGA
Upstream 100 bases:
>100_bases GCAAGGTCCTGCGGGCGCACAGCCCGCAGGTGGCCCCCGCCTGGACCCCGACCTCCGCGGACCCCGCCACCTCGACCCCG ATGACCATGGGAGGAACGGC
Downstream 100 bases:
>100_bases GACCAGCACCAGCACCAGCACTGATGCCGGCACCGATGTCGCCGCCGTCCAGACCCGGCTGCGCAAGCTGAACAGCAAGG CCTCGCAGCTCAAGCTCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: ORF3 [H]
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MTAPAPTAGGQFEGFLRDLVDQLRAGDTYGNLDRLPDAQLISPFILTREQRRQIASNCDIDAVIEGRVRSFYQAVAASVE KTTGVITTTVLDLNHEGFGRVIVFGGRLVVLSDVLRDVQRFGFNSLEDLAARGEAMVTAAAKLVDQWREVARDDS
Sequences:
>Translated_155_residues MTAPAPTAGGQFEGFLRDLVDQLRAGDTYGNLDRLPDAQLISPFILTREQRRQIASNCDIDAVIEGRVRSFYQAVAASVE KTTGVITTTVLDLNHEGFGRVIVFGGRLVVLSDVLRDVQRFGFNSLEDLAARGEAMVTAAAKLVDQWREVARDDS >Mature_154_residues TAPAPTAGGQFEGFLRDLVDQLRAGDTYGNLDRLPDAQLISPFILTREQRRQIASNCDIDAVIEGRVRSFYQAVAASVEK TTGVITTTVLDLNHEGFGRVIVFGGRLVVLSDVLRDVQRFGFNSLEDLAARGEAMVTAAAKLVDQWREVARDDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0460 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004952 [H]
Pfam domain/function: PF03270 DUF269 [H]
EC number: NA
Molecular weight: Translated: 16970; Mature: 16839
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPAPTAGGQFEGFLRDLVDQLRAGDTYGNLDRLPDAQLISPFILTREQRRQIASNCDI CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH DAVIEGRVRSFYQAVAASVEKTTGVITTTVLDLNHEGFGRVIVFGGRLVVLSDVLRDVQR HHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCEEEEECCHHHHHHHHHHHHHH FGFNSLEDLAARGEAMVTAAAKLVDQWREVARDDS CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TAPAPTAGGQFEGFLRDLVDQLRAGDTYGNLDRLPDAQLISPFILTREQRRQIASNCDI CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH DAVIEGRVRSFYQAVAASVEKTTGVITTTVLDLNHEGFGRVIVFGGRLVVLSDVLRDVQR HHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCCCCCEEEEECCHHHHHHHHHHHHHH FGFNSLEDLAARGEAMVTAAAKLVDQWREVARDDS CCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7642138 [H]