| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318606
Identifier: 158318606
GI number: 158318606
Start: 8378616
End: 8378879
Strand: Reverse
Name: 158318606
Synonym: Franean1_6874
Alternate gene names: NA
Gene position: 8378879-8378616 (Counterclockwise)
Preceding gene: 158318607
Following gene: 158318605
Centisome position: 93.28
GC content: 67.42
Gene sequence:
>264_bases ATGACTCCTGAGACCAGCACCAGCACCAGCACTGATGCCGGCACCGATGTCGCCGCCGTCCAGACCCGGCTGCGCAAGCT GAACAGCAAGGCCTCGCAGCTCAAGCTCGACCTGCACGACCTCGCCGAGGACCTCCCGATCAACTGGGAGAACATCCTCG ACCTCGCCCGCCGTACCTACGACGCCTACGCCGAGATCGCGCTGCTGGAGAACGAGCTGCGCGCCAGCGCCGCCGGTGGC ACCGGGAAGGGAGCGGGAGCATGA
Upstream 100 bases:
>100_bases CGCTTCGGCTTCAACTCGCTCGAGGATCTCGCCGCCCGTGGCGAGGCCATGGTCACCGCCGCCGCCAAGCTCGTCGACCA GTGGAGGGAGGTCGCCCGCG
Downstream 100 bases:
>100_bases GCGCGCTCACCAGCCAGCTCGAGGAGTTCCGCCGCTGCTCGACCGCCGAGCAGTACTTCGACCTGCTCGACGTCGACTAC GACCCGCGGGTGGTGGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MTPETSTSTSTDAGTDVAAVQTRLRKLNSKASQLKLDLHDLAEDLPINWENILDLARRTYDAYAEIALLENELRASAAGG TGKGAGA
Sequences:
>Translated_87_residues MTPETSTSTSTDAGTDVAAVQTRLRKLNSKASQLKLDLHDLAEDLPINWENILDLARRTYDAYAEIALLENELRASAAGG TGKGAGA >Mature_86_residues TPETSTSTSTDAGTDVAAVQTRLRKLNSKASQLKLDLHDLAEDLPINWENILDLARRTYDAYAEIALLENELRASAAGGT GKGAGA
Specific function: Unknown
COG id: COG5420
COG function: function code S; Uncharacterized conserved small protein containing a coiled-coil domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0437 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007774 [H]
Pfam domain/function: PF05082 DUF683 [H]
EC number: NA
Molecular weight: Translated: 9245; Mature: 9114
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPETSTSTSTDAGTDVAAVQTRLRKLNSKASQLKLDLHDLAEDLPINWENILDLARRTY CCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DAYAEIALLENELRASAAGGTGKGAGA HHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure TPETSTSTSTDAGTDVAAVQTRLRKLNSKASQLKLDLHDLAEDLPINWENILDLARRTY CCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH DAYAEIALLENELRASAAGGTGKGAGA HHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7642138 [H]