| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318594
Identifier: 158318594
GI number: 158318594
Start: 8365131
End: 8366462
Strand: Reverse
Name: 158318594
Synonym: Franean1_6862
Alternate gene names: NA
Gene position: 8366462-8365131 (Counterclockwise)
Preceding gene: 158318595
Following gene: 158318591
Centisome position: 93.15
GC content: 71.77
Gene sequence:
>1332_bases ATGAATACCGCGCGGAGTGTGCAGGTCGACGGGGACGGTTCCAGTCCGGTTGACGTGCCGGAGCAGGAGAGAACGTTCGA GGGGCGGGTGCGTGGGCTGCTGGTGCGGATCGGTGCGGCGGTCCGGTCGATAGCGGCGGGGAACGCGGACCTGCTGGGGC TGTTGGCGCAGTTCGCCGACCTGCGGCCCCCGGCGGCCGGCCGGGAGGTTCTGTTCGACGAGTTCGCTCCTGAGGATGTC GCGGCGGTGCTGGGGGTGTCCCCGCAGGCCGCGGCGAGTCAGATGCTGTTCGCGTGCACGGTGGCGCGCCGGCTGCCCCA CGCGGTGGAGGCGTTGAAGGCCGGGGTGCTGGACGTGCAGCGGCCGCGTTCGTTGGAGAACGCGGTCCGTCCGCTCGACG GTCCGCTCGCGGCGCAGGTCGAGGCCCGTGTGCTGGCCGGGGGTGCGCGGCCGACCCGGGGGGCGTTCACGGATGCGTGC CGTCGTGCCGTGCACACGGTGGACCCGGCCGGCGCGGCCGAACGCGCGCGGGCCCGGAAGAAGGAACGGCGGGTACGGGT GTCACCGGGGGAGGACGGGACGAGTTGCCTGTCGGCGGTGCTGCCCGCCGAGGAGGCGACCGCCTGCTACCAGCGGGTCG ATCAGATCGCCCAGGGGATCGCCGCGCACCGAACGGCCGAGGACAGTCGCAGTCGTGACCAGATCCGCGCGGATGTCCTC GTCGATCTCCTCTGCGGGCGGACCGAGCATGCGGTGCCGCTGCCGTGCGAGGTGCAGGTCGTGGTCCCGGTGACGGTGCT GCTGGGGTTGGCGGAGGATCCCGGGGAGATCCCCGGGTACGGGCCGGTCCCCGCGGCGGTGGCCCGGGAGATGGCCGCAC GGCCGGGGTCGACGTGGCGGCGGATCCTCACCGACCCTCAGGGCACGCTCGTCGAGATCGCCGACCGGCGCCTACCGACC GCGGCTCAGGCCCGGCATGTGCGGGCACGGAACCGTAGCTGTGTCTTCCCGGGCTGCGCGCGTACGTCGCGACGCGCGGA TATCGACCACACGGTGGCGCATGCGAGCGGCGGGTCGACGCTCACCCGGAACCTCGGGCCTACGTGCCGCAAGCATCACC GCATGAAGCACTCCGGCCGTTGGCGGCTGACACAACCGCGGGAAGGAACGTTCGTCTGGACGGGTCCGTTCGGGGCGACG CTCGTCACCCACCCACATTCATACATCGAACCGCAGAACAAGGCCGGTACGACGGGAGGGGGTGGTGATGAACCGTCGGG CCACACCGCCTCGGGGTGGAAAATACCCCACGACACACAGCCACCCTTCTAA
Upstream 100 bases:
>100_bases ACTTGGTGTGGTCTCGTCTGGTTCGCGCTTGTCGGGGTGGCCCGGACACTCCTATGGTCGAACGTGTGTTCGATCTTATT GTGGGGTGGGTGTCGGCGCC
Downstream 100 bases:
>100_bases CCCCCACCACACCAGAAACCAGGCTCCGGAATTCCAGCATCGAGCGCGGTGCGCTCTTGAGTGCCCGCTGTGGATCTCGG TGGCGTGTACTGCGTGTGGT
Product: HNH endonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 443
Protein sequence:
>443_residues MNTARSVQVDGDGSSPVDVPEQERTFEGRVRGLLVRIGAAVRSIAAGNADLLGLLAQFADLRPPAAGREVLFDEFAPEDV AAVLGVSPQAAASQMLFACTVARRLPHAVEALKAGVLDVQRPRSLENAVRPLDGPLAAQVEARVLAGGARPTRGAFTDAC RRAVHTVDPAGAAERARARKKERRVRVSPGEDGTSCLSAVLPAEEATACYQRVDQIAQGIAAHRTAEDSRSRDQIRADVL VDLLCGRTEHAVPLPCEVQVVVPVTVLLGLAEDPGEIPGYGPVPAAVAREMAARPGSTWRRILTDPQGTLVEIADRRLPT AAQARHVRARNRSCVFPGCARTSRRADIDHTVAHASGGSTLTRNLGPTCRKHHRMKHSGRWRLTQPREGTFVWTGPFGAT LVTHPHSYIEPQNKAGTTGGGGDEPSGHTASGWKIPHDTQPPF
Sequences:
>Translated_443_residues MNTARSVQVDGDGSSPVDVPEQERTFEGRVRGLLVRIGAAVRSIAAGNADLLGLLAQFADLRPPAAGREVLFDEFAPEDV AAVLGVSPQAAASQMLFACTVARRLPHAVEALKAGVLDVQRPRSLENAVRPLDGPLAAQVEARVLAGGARPTRGAFTDAC RRAVHTVDPAGAAERARARKKERRVRVSPGEDGTSCLSAVLPAEEATACYQRVDQIAQGIAAHRTAEDSRSRDQIRADVL VDLLCGRTEHAVPLPCEVQVVVPVTVLLGLAEDPGEIPGYGPVPAAVAREMAARPGSTWRRILTDPQGTLVEIADRRLPT AAQARHVRARNRSCVFPGCARTSRRADIDHTVAHASGGSTLTRNLGPTCRKHHRMKHSGRWRLTQPREGTFVWTGPFGAT LVTHPHSYIEPQNKAGTTGGGGDEPSGHTASGWKIPHDTQPPF >Mature_443_residues MNTARSVQVDGDGSSPVDVPEQERTFEGRVRGLLVRIGAAVRSIAAGNADLLGLLAQFADLRPPAAGREVLFDEFAPEDV AAVLGVSPQAAASQMLFACTVARRLPHAVEALKAGVLDVQRPRSLENAVRPLDGPLAAQVEARVLAGGARPTRGAFTDAC RRAVHTVDPAGAAERARARKKERRVRVSPGEDGTSCLSAVLPAEEATACYQRVDQIAQGIAAHRTAEDSRSRDQIRADVL VDLLCGRTEHAVPLPCEVQVVVPVTVLLGLAEDPGEIPGYGPVPAAVAREMAARPGSTWRRILTDPQGTLVEIADRRLPT AAQARHVRARNRSCVFPGCARTSRRADIDHTVAHASGGSTLTRNLGPTCRKHHRMKHSGRWRLTQPREGTFVWTGPFGAT LVTHPHSYIEPQNKAGTTGGGGDEPSGHTASGWKIPHDTQPPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.tuberculosis Rv3776 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003870 - InterPro: IPR003615 [H]
Pfam domain/function: PF02720 DUF222 [H]
EC number: NA
Molecular weight: Translated: 47238; Mature: 47238
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTARSVQVDGDGSSPVDVPEQERTFEGRVRGLLVRIGAAVRSIAAGNADLLGLLAQFAD CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LRPPAAGREVLFDEFAPEDVAAVLGVSPQAAASQMLFACTVARRLPHAVEALKAGVLDVQ CCCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RPRSLENAVRPLDGPLAAQVEARVLAGGARPTRGAFTDACRRAVHTVDPAGAAERARARK CCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH KERRVRVSPGEDGTSCLSAVLPAEEATACYQRVDQIAQGIAAHRTAEDSRSRDQIRADVL HHCCEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VDLLCGRTEHAVPLPCEVQVVVPVTVLLGLAEDPGEIPGYGPVPAAVAREMAARPGSTWR HHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH RILTDPQGTLVEIADRRLPTAAQARHVRARNRSCVFPGCARTSRRADIDHTVAHASGGST HHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC LTRNLGPTCRKHHRMKHSGRWRLTQPREGTFVWTGPFGATLVTHPHSYIEPQNKAGTTGG CHHCCCHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCHHHCCCCCCCCCCCC GGDEPSGHTASGWKIPHDTQPPF CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNTARSVQVDGDGSSPVDVPEQERTFEGRVRGLLVRIGAAVRSIAAGNADLLGLLAQFAD CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LRPPAAGREVLFDEFAPEDVAAVLGVSPQAAASQMLFACTVARRLPHAVEALKAGVLDVQ CCCCCCCCHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RPRSLENAVRPLDGPLAAQVEARVLAGGARPTRGAFTDACRRAVHTVDPAGAAERARARK CCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH KERRVRVSPGEDGTSCLSAVLPAEEATACYQRVDQIAQGIAAHRTAEDSRSRDQIRADVL HHCCEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH VDLLCGRTEHAVPLPCEVQVVVPVTVLLGLAEDPGEIPGYGPVPAAVAREMAARPGSTWR HHHHHCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHH RILTDPQGTLVEIADRRLPTAAQARHVRARNRSCVFPGCARTSRRADIDHTVAHASGGST HHHCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC LTRNLGPTCRKHHRMKHSGRWRLTQPREGTFVWTGPFGATLVTHPHSYIEPQNKAGTTGG CHHCCCHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCHHHCCCCCCCCCCCC GGDEPSGHTASGWKIPHDTQPPF CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]