| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is uhpA [C]
Identifier: 158318546
GI number: 158318546
Start: 8303353
End: 8303832
Strand: Direct
Name: uhpA [C]
Synonym: Franean1_6814
Alternate gene names: 158318546
Gene position: 8303353-8303832 (Clockwise)
Preceding gene: 158318545
Following gene: 158318547
Centisome position: 92.44
GC content: 74.58
Gene sequence:
>480_bases ATGGCCGTCCAGAGCGAGCTCGCCGCACGCCTGGTCGAGCACGGAGACGCTGCCGCGGCGGAACGCATGCTGGAGGTTCG CCAGGTCGCCCACGACTCGCTGCGCGAGATGCGCGCGGTTGTCGACGGCTACCGCCGGGCCGACCTGGGCGCGGAGCTCG CCGGCGCCCGGGCGATGCGCGCCGAGGTCCCCGGATGCGCCAACGTGATCGTGACCAGCCACGGACGTCCCGGTTATCTC AAGCAGGCGCTCGCGGCGGGGGCGTGCGGCTTCCTTCCGAAGACCGTCTCCGCGCAGGTCCTCGCCGACGTGGTCCGGGC GGTGCACGGCGGCGGCCGCTACGTGGACCCGGAGCTGGCCGCGGAGGCGATCGCGGCCGGAGAGAGCCCGTTGACCTCGC GTGAGGCCGAGGTCCTCGAGCTGGGCGCCGTCAACCGGCACGAGGCCGTCCAGCTCGCCCGCGCCCGCGGCTGGATCTGA
Upstream 100 bases:
>100_bases TAGACCGGTCCCGGCGGTCCACACCAGCCTCGCCGTGGCCGAGGAGCGGCTGCGGTTCGCCCGGGACCTGCACGACGTGC TGGGCCGGAACCTGTCGCTG
Downstream 100 bases:
>100_bases CCCGAGGCACCGCCGGCCGGCCGGGGATGAGCATCGAGGGAGTGGGTGGCCTGCCGCCTACGGGGCCGCAACGGGGCCCG CTCGGCCAGCGGCTATTTCG
Product: response regulator receiver protein
Products: NA
Alternate protein names: Two Component Transcriptional Regulator LuxR Family; LuxR Family Two Component Transcriptional Regulator; Response Regulator Receiver Protein; Two Component LuxR Family Transcriptional Regulator; Two-Component Response Regulator; Two Component Transcriptional Regulator; NarL Family Two-Component Response Regulator; LuxR Response Regulator Receiver; LuxR Family Two Component System Response Regulator; Regulator; Response Regulator; LuxR Family Two-Component Response Regulator; Regulatory Protein; Response Regulator Receiver; Signal Transduction Histidine Kinase
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MAVQSELAARLVEHGDAAAAERMLEVRQVAHDSLREMRAVVDGYRRADLGAELAGARAMRAEVPGCANVIVTSHGRPGYL KQALAAGACGFLPKTVSAQVLADVVRAVHGGGRYVDPELAAEAIAAGESPLTSREAEVLELGAVNRHEAVQLARARGWI
Sequences:
>Translated_159_residues MAVQSELAARLVEHGDAAAAERMLEVRQVAHDSLREMRAVVDGYRRADLGAELAGARAMRAEVPGCANVIVTSHGRPGYL KQALAAGACGFLPKTVSAQVLADVVRAVHGGGRYVDPELAAEAIAAGESPLTSREAEVLELGAVNRHEAVQLARARGWI >Mature_158_residues AVQSELAARLVEHGDAAAAERMLEVRQVAHDSLREMRAVVDGYRRADLGAELAGARAMRAEVPGCANVIVTSHGRPGYLK QALAAGACGFLPKTVSAQVLADVVRAVHGGGRYVDPELAAEAIAAGESPLTSREAEVLELGAVNRHEAVQLARARGWI
Specific function: Appears To Be The Positive Activator Of Uhpt Transcription. [C]
COG id: COG2197
COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16714; Mature: 16583
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVQSELAARLVEHGDAAAAERMLEVRQVAHDSLREMRAVVDGYRRADLGAELAGARAMR CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVPGCANVIVTSHGRPGYLKQALAAGACGFLPKTVSAQVLADVVRAVHGGGRYVDPELA HCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH AEAIAAGESPLTSREAEVLELGAVNRHEAVQLARARGWI HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AVQSELAARLVEHGDAAAAERMLEVRQVAHDSLREMRAVVDGYRRADLGAELAGARAMR CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AEVPGCANVIVTSHGRPGYLKQALAAGACGFLPKTVSAQVLADVVRAVHGGGRYVDPELA HCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHH AEAIAAGESPLTSREAEVLELGAVNRHEAVQLARARGWI HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA