| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is katA [H]
Identifier: 158318523
GI number: 158318523
Start: 8272731
End: 8274254
Strand: Direct
Name: katA [H]
Synonym: Franean1_6791
Alternate gene names: 158318523
Gene position: 8272731-8274254 (Clockwise)
Preceding gene: 158318521
Following gene: 158318530
Centisome position: 92.1
GC content: 66.08
Gene sequence:
>1524_bases GTGACCGTTCAGAAGCCTCGTCCGACGACGACCGATGCCGGAATACCCGTCGCCAGCGATGAGCACTCGCTGTCCGTGGG GCCGGACGGCCCGCTGCTGCTGCAGGATCACTACCTGATCGAGCAGATGGCGAACTTCAACCGGGAACGCATCCCGGAGC GTCAGCCGCACGCGAAGGGCGGTGGCGCGTTCGGCACCTTCCAGGTCACCCAGGACATGAGCGCGTTCACCCGGGCCGCG GTGTTCCAGCCCGGTACCGAGACGGATGTGATCATTCGGTTCTCGACGGTGGCCGGGGAGCGCGGCAGCCCCGACACCTG GCGCGACCCACGCGGTTTCGCGGTCAAGTTCTACACCAGCGAGGGCAATCTCGACATCGTCGGGAACAACACGCCGGTCT TCTTCATCAGGGATCCGCTGAAGTTCCAGCACTTCATCCGGTCCCAGAAGCGCCGGGCCGACAACAACCTGCGTGACCAC GACATGCAGTGGGACTTCTGGACGCTGTCACCGGAGTCCGCGCACCAGGTCACGTGGCTGATGGGTGACCGCGGCATTCC GCGCACCTGGCGACACATGAACGGATACTCCAGCCACACGTACATGTGGATCAACGCCGCCGGCGAGCGGTTCTGGGTGA AGTACCACTTCAAGACCGATCAGGGCATCGAGTTCTTCACCCAGGACGAGGGTGACCAGATGGCCTCGGTAGACACCGAC TACCACCAGCGCGACCTCTTCGAGCACATCGCCGCCGGGGACTTCCCGAGCTGGACGCTGAAGATGCAGATCATGCCGTT CGAGGAGGCCAAGACCTACCGGTTCAACCCCTTCGACCTGACCAAGGTCTGGCCGCACGGCGACTACCCGCTGCACGAGG TCGGCCGGCTGACACTCAACCGCAACATCACCGATTTTCACACGGAGATGGAGCAGGCCGCGTTCGAGCCGAACAACATC GTCGCGGGCACCGGGCTGTCGCCGGACAAGATGCTGCTCGCTCGCGGGTTCAGCTACGCCGACGCCCACCGGGCCCGCCT TGGTGTGAACTACAAGCAGATCCCGGTGAACTCCGCGAAGGTGCCCGTCCACAGCTACTCCAAGGACGGCGCGATGCGGG TGCAGAACGTCACCGACCCGGTGTACGCGCCGAACTCCTACAGCGGCCCGGTGGCCCAGCCGGAGCTGACCGACGACGGC GGCCACTGGTACTCCGACGGCGAGATGGTTCGCGCCGCTTACACCTCGCGCCCGGAGGACGACGACTGGGGGCAGGCCGG GACGATGGTCCGCGATGTCCTCGACGACGCCGCGCGGCAGCGGCTGGTCGACAACGTCGTCGGGCACCTGCTCGACGGTG TCAGCGAACCCGTGCTGGTCCGCGCCTTCGAGTACTGGCGCAATGTCGACAAGGACCTCGGCACCCGGATCGAGGCAGAC GTACGGGCCAAGCAGGACGAGACCGATCCGAAGGCCGCGCAGCAGGCCAACCCGGCCCGGTCCAGCGCGCAGGCCAAGGC CTGA
Upstream 100 bases:
>100_bases ATCGCCGAGGCCGGGATCGCGGTCCGGGACGGGTGCCGCGGCTGTCGACCGGGTGGGCAAGTCCCGCGATGTCAAATCCC GCGATGTTATGGAGTGAGTC
Downstream 100 bases:
>100_bases CCGTCCGCCGGCCGTGGCCCGGGGCCCGCCCTCCCAGCCGGGCCCGAACCACGGCCGGCGGCGCCACCTCCGCCACTACC GCGAGTCCGCCACTACCGCG
Product: catalase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MTVQKPRPTTTDAGIPVASDEHSLSVGPDGPLLLQDHYLIEQMANFNRERIPERQPHAKGGGAFGTFQVTQDMSAFTRAA VFQPGTETDVIIRFSTVAGERGSPDTWRDPRGFAVKFYTSEGNLDIVGNNTPVFFIRDPLKFQHFIRSQKRRADNNLRDH DMQWDFWTLSPESAHQVTWLMGDRGIPRTWRHMNGYSSHTYMWINAAGERFWVKYHFKTDQGIEFFTQDEGDQMASVDTD YHQRDLFEHIAAGDFPSWTLKMQIMPFEEAKTYRFNPFDLTKVWPHGDYPLHEVGRLTLNRNITDFHTEMEQAAFEPNNI VAGTGLSPDKMLLARGFSYADAHRARLGVNYKQIPVNSAKVPVHSYSKDGAMRVQNVTDPVYAPNSYSGPVAQPELTDDG GHWYSDGEMVRAAYTSRPEDDDWGQAGTMVRDVLDDAARQRLVDNVVGHLLDGVSEPVLVRAFEYWRNVDKDLGTRIEAD VRAKQDETDPKAAQQANPARSSAQAKA
Sequences:
>Translated_507_residues MTVQKPRPTTTDAGIPVASDEHSLSVGPDGPLLLQDHYLIEQMANFNRERIPERQPHAKGGGAFGTFQVTQDMSAFTRAA VFQPGTETDVIIRFSTVAGERGSPDTWRDPRGFAVKFYTSEGNLDIVGNNTPVFFIRDPLKFQHFIRSQKRRADNNLRDH DMQWDFWTLSPESAHQVTWLMGDRGIPRTWRHMNGYSSHTYMWINAAGERFWVKYHFKTDQGIEFFTQDEGDQMASVDTD YHQRDLFEHIAAGDFPSWTLKMQIMPFEEAKTYRFNPFDLTKVWPHGDYPLHEVGRLTLNRNITDFHTEMEQAAFEPNNI VAGTGLSPDKMLLARGFSYADAHRARLGVNYKQIPVNSAKVPVHSYSKDGAMRVQNVTDPVYAPNSYSGPVAQPELTDDG GHWYSDGEMVRAAYTSRPEDDDWGQAGTMVRDVLDDAARQRLVDNVVGHLLDGVSEPVLVRAFEYWRNVDKDLGTRIEAD VRAKQDETDPKAAQQANPARSSAQAKA >Mature_506_residues TVQKPRPTTTDAGIPVASDEHSLSVGPDGPLLLQDHYLIEQMANFNRERIPERQPHAKGGGAFGTFQVTQDMSAFTRAAV FQPGTETDVIIRFSTVAGERGSPDTWRDPRGFAVKFYTSEGNLDIVGNNTPVFFIRDPLKFQHFIRSQKRRADNNLRDHD MQWDFWTLSPESAHQVTWLMGDRGIPRTWRHMNGYSSHTYMWINAAGERFWVKYHFKTDQGIEFFTQDEGDQMASVDTDY HQRDLFEHIAAGDFPSWTLKMQIMPFEEAKTYRFNPFDLTKVWPHGDYPLHEVGRLTLNRNITDFHTEMEQAAFEPNNIV AGTGLSPDKMLLARGFSYADAHRARLGVNYKQIPVNSAKVPVHSYSKDGAMRVQNVTDPVYAPNSYSGPVAQPELTDDGG HWYSDGEMVRAAYTSRPEDDDWGQAGTMVRDVLDDAARQRLVDNVVGHLLDGVSEPVLVRAFEYWRNVDKDLGTRIEADV RAKQDETDPKAAQQANPARSSAQAKA
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=494, Percent_Identity=49.1902834008097, Blast_Score=466, Evalue=1e-131, Organism=Escherichia coli, GI48994891, Length=386, Percent_Identity=43.5233160621762, Blast_Score=317, Evalue=2e-87, Organism=Caenorhabditis elegans, GI71998444, Length=487, Percent_Identity=46.8172484599589, Blast_Score=440, Evalue=1e-124, Organism=Caenorhabditis elegans, GI25151141, Length=485, Percent_Identity=44.3298969072165, Blast_Score=410, Evalue=1e-115, Organism=Caenorhabditis elegans, GI25147792, Length=487, Percent_Identity=44.1478439425051, Blast_Score=409, Evalue=1e-114, Organism=Saccharomyces cerevisiae, GI6320462, Length=490, Percent_Identity=44.6938775510204, Blast_Score=392, Evalue=1e-110, Organism=Saccharomyces cerevisiae, GI6321525, Length=503, Percent_Identity=37.7733598409543, Blast_Score=324, Evalue=2e-89, Organism=Drosophila melanogaster, GI17981717, Length=480, Percent_Identity=48.75, Blast_Score=456, Evalue=1e-128, Organism=Drosophila melanogaster, GI19920968, Length=472, Percent_Identity=45.1271186440678, Blast_Score=407, Evalue=1e-114,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 57432; Mature: 57301
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVQKPRPTTTDAGIPVASDEHSLSVGPDGPLLLQDHYLIEQMANFNRERIPERQPHAKG CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHCCCHHHCCCCCCCCCC GGAFGTFQVTQDMSAFTRAAVFQPGTETDVIIRFSTVAGERGSPDTWRDPRGFAVKFYTS CCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC EGNLDIVGNNTPVFFIRDPLKFQHFIRSQKRRADNNLRDHDMQWDFWTLSPESAHQVTWL CCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEE MGDRGIPRTWRHMNGYSSHTYMWINAAGERFWVKYHFKTDQGIEFFTQDEGDQMASVDTD ECCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCCCEECCCCC YHQRDLFEHIAAGDFPSWTLKMQIMPFEEAKTYRFNPFDLTKVWPHGDYPLHEVGRLTLN HHHHHHHHHHHCCCCCCEEEEEEEEEHHCCCCEECCCCCCEEECCCCCCCHHHHCEEEEC RNITDFHTEMEQAAFEPNNIVAGTGLSPDKMLLARGFSYADAHRARLGVNYKQIPVNSAK CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCC VPVHSYSKDGAMRVQNVTDPVYAPNSYSGPVAQPELTDDGGHWYSDGEMVRAAYTSRPED CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCC DDWGQAGTMVRDVLDDAARQRLVDNVVGHLLDGVSEPVLVRAFEYWRNVDKDLGTRIEAD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEHH VRAKQDETDPKAAQQANPARSSAQAKA HHCCCCCCCCHHHHHCCCCCCCCCCCC >Mature Secondary Structure TVQKPRPTTTDAGIPVASDEHSLSVGPDGPLLLQDHYLIEQMANFNRERIPERQPHAKG CCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEHHHHHHHHHCCCHHHCCCCCCCCCC GGAFGTFQVTQDMSAFTRAAVFQPGTETDVIIRFSTVAGERGSPDTWRDPRGFAVKFYTS CCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC EGNLDIVGNNTPVFFIRDPLKFQHFIRSQKRRADNNLRDHDMQWDFWTLSPESAHQVTWL CCCEEEEECCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCEEEEE MGDRGIPRTWRHMNGYSSHTYMWINAAGERFWVKYHFKTDQGIEFFTQDEGDQMASVDTD ECCCCCCHHHHHCCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEECCCCCCEECCCCC YHQRDLFEHIAAGDFPSWTLKMQIMPFEEAKTYRFNPFDLTKVWPHGDYPLHEVGRLTLN HHHHHHHHHHHCCCCCCEEEEEEEEEHHCCCCEECCCCCCEEECCCCCCCHHHHCEEEEC RNITDFHTEMEQAAFEPNNIVAGTGLSPDKMLLARGFSYADAHRARLGVNYKQIPVNSAK CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHCCCEEECCCCCCC VPVHSYSKDGAMRVQNVTDPVYAPNSYSGPVAQPELTDDGGHWYSDGEMVRAAYTSRPED CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCC DDWGQAGTMVRDVLDDAARQRLVDNVVGHLLDGVSEPVLVRAFEYWRNVDKDLGTRIEAD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEHH VRAKQDETDPKAAQQANPARSSAQAKA HHCCCCCCCCHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1426241; 12454454 [H]