| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318515
Identifier: 158318515
GI number: 158318515
Start: 8259219
End: 8261045
Strand: Reverse
Name: 158318515
Synonym: Franean1_6783
Alternate gene names: NA
Gene position: 8261045-8259219 (Counterclockwise)
Preceding gene: 158318522
Following gene: 158318513
Centisome position: 91.97
GC content: 65.9
Gene sequence:
>1827_bases ATGGGCGCGCGCCTTACCAGAATTTTGGCTTCCGCGGGTTTGGCTGTCCTGGCGGCCATCGGAGTTCTGACAGTCGGTTC TGGCGTTGCCGCACGTGCCGCGTCACCCGGCTGGCTCTGGATACCCAAGGTCGACTCGTGTGTAGCGACGTCAAACGGCT CTGCCGGTTCCTCGATCACACTTTCCTGGAAGGGCAGAACCAACTGCCCGACCGGTGATCTCTTCAATTTCTCCGCGACG CTCCATCAGCTCGGGGCCCCTGATGTCCTCCTGTACGCCGTGCAGTCCGAAGCATCGACCGCGACCTTCAAACTGCCGGC ACTCGTCGACGAGATCCACTACAACATTGAAGTTTGGGGAATTAGCTACCGCTACTGGGACGACGGCTCAGGCCAGTACT ACCAGCTTGCGGGTGGCTATGCAGGACTCTTCTACCCGGATCCCGATGGCGACGGATGCGCCTACAGCCCCGCGGTCGCG AACCCCACCAACTGCCAGGGACCCACGCCGTCACCGTCACCCACCCGCTCGCCATCACCCACCCCGTCACCGACCCCACC CACCAGCCCCTCTCCGACACCCAAGCCCACCCCGACTGCTCCGGCCGTGTCCGCGGGAGCTGACAGGACCGTGGCCGGGC AGCGTTCTGTCACGCTGGCGGGCAAGGTCTCCGGAGCATCGGCCACGGCCTGGACCCAGCTCGCCGGCCCTGGTCAGGTC ACCTTCTCGGCGGGCTCGGCGAACGCCGTCGCGACCTTCTCCACCCTTGGCACCTACGCGCTGCGCCTCACCGCCGTCAG CCCGACCGGCTTGAGTGCCCACGACGATGTAACGATCCGCATCGTTGATCATTATCGGGTGGAACTCAAGTCGTGGATTC CGCAGAGCAGCACCGCGGACCCGTTCGTGCTCGCCCCGGTCTCGTTTCCCAACCCTTATATCCCGTTGATGGGACAGCCA CTGCGTAGCTGTTTCGCCGCGGTCAGCTCCGGCAGCCCAAACGGATCAGTCAGAGTCGTCAGCTCCGAGTTCGCCGGTGA CGGCCACCGGGTCTACGGCGTGACGGGCCCGGCGAACGACACCGGACGCGCCTCCGACGTCCGGATCATCACCACCGCGG AACTCGACTGGGACGGGAAAGCACTGACGGGCCTGTCCGCCAAGCTCGGGGTCGGCACCACCACACGGACGTTCACCATC GTTGGCGACACCGGGAAGCGCGCCACCTGCCGCCTGGTCGGGCACGCCGACCCATCGGTCAACCCCGGCGCGAAGATCAG CTCACCCGCGACACTGACGATCGGTGTGAAGGGATCGGACCCGCTCACGCCCACGAGCGCGGCACCCATGCTCCAAGCAG TCAAGGACATCTGCCAGTCCGCGCTGCCCGGACCTGCCAGTCTCAAAGCGATCTGCGCTGTGCCAACCTCGTGGACCAGC ACCATCCCGATCACCCCGTCACTGGATGGCGCGATCACCGCCACCCCGACATCGACGGGTCTTCGCGTCACCTACACCAC CGACCGGTTCCCGAGCTACGGCATCGCCGTCAGGCGAAACTCCGAAACATCCGCAACAGCGGTGATCACAGACGCGAGTT GCATGCCCGGCACCGGCTACGACGGAGCCGCCACCGTGCTCGCCGGCCTACAGACCGTCATCGGCGACAAGGCGACCGGG ACGCTGAACCTCCCCTACACATCCAGCGTCTGCCGGCAGCTCCCCGCAGCGGTCACCGCCCCGATAGCGGCCTCACTACG CGTGGGAATCAACACCCTCACCGAACCCGTCCTCATCCTCGCCGCGTCCCGAGTCCCACAATCCTGA
Upstream 100 bases:
>100_bases TCTGCTCGTCGCTGCCCATGTCCGGGGTTCTCGGCTGGTGCACCTAGTGGTAGCTTGTGGAGCGAACTTTGATCTATGGG TCCTTTCGGGGGGAATGGCC
Downstream 100 bases:
>100_bases AACACGGCTCCGGTGCGTCCGGCCAACCAGGACCTCGACAGCCATGACGATCAAGTATCGACCACGAGGTTGCCGCATGA CCTAGTCGACGGCACATGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 608; Mature: 607
Protein sequence:
>608_residues MGARLTRILASAGLAVLAAIGVLTVGSGVAARAASPGWLWIPKVDSCVATSNGSAGSSITLSWKGRTNCPTGDLFNFSAT LHQLGAPDVLLYAVQSEASTATFKLPALVDEIHYNIEVWGISYRYWDDGSGQYYQLAGGYAGLFYPDPDGDGCAYSPAVA NPTNCQGPTPSPSPTRSPSPTPSPTPPTSPSPTPKPTPTAPAVSAGADRTVAGQRSVTLAGKVSGASATAWTQLAGPGQV TFSAGSANAVATFSTLGTYALRLTAVSPTGLSAHDDVTIRIVDHYRVELKSWIPQSSTADPFVLAPVSFPNPYIPLMGQP LRSCFAAVSSGSPNGSVRVVSSEFAGDGHRVYGVTGPANDTGRASDVRIITTAELDWDGKALTGLSAKLGVGTTTRTFTI VGDTGKRATCRLVGHADPSVNPGAKISSPATLTIGVKGSDPLTPTSAAPMLQAVKDICQSALPGPASLKAICAVPTSWTS TIPITPSLDGAITATPTSTGLRVTYTTDRFPSYGIAVRRNSETSATAVITDASCMPGTGYDGAATVLAGLQTVIGDKATG TLNLPYTSSVCRQLPAAVTAPIAASLRVGINTLTEPVLILAASRVPQS
Sequences:
>Translated_608_residues MGARLTRILASAGLAVLAAIGVLTVGSGVAARAASPGWLWIPKVDSCVATSNGSAGSSITLSWKGRTNCPTGDLFNFSAT LHQLGAPDVLLYAVQSEASTATFKLPALVDEIHYNIEVWGISYRYWDDGSGQYYQLAGGYAGLFYPDPDGDGCAYSPAVA NPTNCQGPTPSPSPTRSPSPTPSPTPPTSPSPTPKPTPTAPAVSAGADRTVAGQRSVTLAGKVSGASATAWTQLAGPGQV TFSAGSANAVATFSTLGTYALRLTAVSPTGLSAHDDVTIRIVDHYRVELKSWIPQSSTADPFVLAPVSFPNPYIPLMGQP LRSCFAAVSSGSPNGSVRVVSSEFAGDGHRVYGVTGPANDTGRASDVRIITTAELDWDGKALTGLSAKLGVGTTTRTFTI VGDTGKRATCRLVGHADPSVNPGAKISSPATLTIGVKGSDPLTPTSAAPMLQAVKDICQSALPGPASLKAICAVPTSWTS TIPITPSLDGAITATPTSTGLRVTYTTDRFPSYGIAVRRNSETSATAVITDASCMPGTGYDGAATVLAGLQTVIGDKATG TLNLPYTSSVCRQLPAAVTAPIAASLRVGINTLTEPVLILAASRVPQS >Mature_607_residues GARLTRILASAGLAVLAAIGVLTVGSGVAARAASPGWLWIPKVDSCVATSNGSAGSSITLSWKGRTNCPTGDLFNFSATL HQLGAPDVLLYAVQSEASTATFKLPALVDEIHYNIEVWGISYRYWDDGSGQYYQLAGGYAGLFYPDPDGDGCAYSPAVAN PTNCQGPTPSPSPTRSPSPTPSPTPPTSPSPTPKPTPTAPAVSAGADRTVAGQRSVTLAGKVSGASATAWTQLAGPGQVT FSAGSANAVATFSTLGTYALRLTAVSPTGLSAHDDVTIRIVDHYRVELKSWIPQSSTADPFVLAPVSFPNPYIPLMGQPL RSCFAAVSSGSPNGSVRVVSSEFAGDGHRVYGVTGPANDTGRASDVRIITTAELDWDGKALTGLSAKLGVGTTTRTFTIV GDTGKRATCRLVGHADPSVNPGAKISSPATLTIGVKGSDPLTPTSAAPMLQAVKDICQSALPGPASLKAICAVPTSWTST IPITPSLDGAITATPTSTGLRVTYTTDRFPSYGIAVRRNSETSATAVITDASCMPGTGYDGAATVLAGLQTVIGDKATGT LNLPYTSSVCRQLPAAVTAPIAASLRVGINTLTEPVLILAASRVPQS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62020; Mature: 61889
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGARLTRILASAGLAVLAAIGVLTVGSGVAARAASPGWLWIPKVDSCVATSNGSAGSSIT CCHHHHHHHHHCCHHHHHHHHHHHCCCCCHHCCCCCCEEECCCCCCEEEECCCCCCCEEE LSWKGRTNCPTGDLFNFSATLHQLGAPDVLLYAVQSEASTATFKLPALVDEIHYNIEVWG EEECCCCCCCCCCCEEHHHHHHHCCCCCEEEEEEECCCCCEEEECHHHHHHHEEEEEEEE ISYRYWDDGSGQYYQLAGGYAGLFYPDPDGDGCAYSPAVANPTNCQGPTPSPSPTRSPSP EEEEEEECCCCCEEEEECCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC TPSPTPPTSPSPTPKPTPTAPAVSAGADRTVAGQRSVTLAGKVSGASATAWTQLAGPGQV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEEEEEECCCCEE TFSAGSANAVATFSTLGTYALRLTAVSPTGLSAHDDVTIRIVDHYRVELKSWIPQSSTAD EEECCCCCEEEEHHHHCEEEEEEEEECCCCCCCCCCEEEEEECCEEEEHHHCCCCCCCCC PFVLAPVSFPNPYIPLMGQPLRSCFAAVSSGSPNGSVRVVSSEFAGDGHRVYGVTGPAND CEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCC TGRASDVRIITTAELDWDGKALTGLSAKLGVGTTTRTFTIVGDTGKRATCRLVGHADPSV CCCCCCEEEEEEEEECCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCC NPGAKISSPATLTIGVKGSDPLTPTSAAPMLQAVKDICQSALPGPASLKAICAVPTSWTS CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC TIPITPSLDGAITATPTSTGLRVTYTTDRFPSYGIAVRRNSETSATAVITDASCMPGTGY EECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCC DGAATVLAGLQTVIGDKATGTLNLPYTSSVCRQLPAAVTAPIAASLRVGINTLTEPVLIL CHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCHHHHCCHHHHHHHCHHHHCCCEEEE AASRVPQS EECCCCCC >Mature Secondary Structure GARLTRILASAGLAVLAAIGVLTVGSGVAARAASPGWLWIPKVDSCVATSNGSAGSSIT CHHHHHHHHHCCHHHHHHHHHHHCCCCCHHCCCCCCEEECCCCCCEEEECCCCCCCEEE LSWKGRTNCPTGDLFNFSATLHQLGAPDVLLYAVQSEASTATFKLPALVDEIHYNIEVWG EEECCCCCCCCCCCEEHHHHHHHCCCCCEEEEEEECCCCCEEEECHHHHHHHEEEEEEEE ISYRYWDDGSGQYYQLAGGYAGLFYPDPDGDGCAYSPAVANPTNCQGPTPSPSPTRSPSP EEEEEEECCCCCEEEEECCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC TPSPTPPTSPSPTPKPTPTAPAVSAGADRTVAGQRSVTLAGKVSGASATAWTQLAGPGQV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEEEEEECCCCEE TFSAGSANAVATFSTLGTYALRLTAVSPTGLSAHDDVTIRIVDHYRVELKSWIPQSSTAD EEECCCCCEEEEHHHHCEEEEEEEEECCCCCCCCCCEEEEEECCEEEEHHHCCCCCCCCC PFVLAPVSFPNPYIPLMGQPLRSCFAAVSSGSPNGSVRVVSSEFAGDGHRVYGVTGPAND CEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCC TGRASDVRIITTAELDWDGKALTGLSAKLGVGTTTRTFTIVGDTGKRATCRLVGHADPSV CCCCCCEEEEEEEEECCCCCEEECCCEECCCCCCEEEEEEEECCCCCEEEEEEECCCCCC NPGAKISSPATLTIGVKGSDPLTPTSAAPMLQAVKDICQSALPGPASLKAICAVPTSWTS CCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC TIPITPSLDGAITATPTSTGLRVTYTTDRFPSYGIAVRRNSETSATAVITDASCMPGTGY EECCCCCCCCCEEECCCCCCEEEEEECCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCC DGAATVLAGLQTVIGDKATGTLNLPYTSSVCRQLPAAVTAPIAASLRVGINTLTEPVLIL CHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHCCHHHHCCHHHHHHHCHHHHCCCEEEE AASRVPQS EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA