| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318476
Identifier: 158318476
GI number: 158318476
Start: 8202315
End: 8203640
Strand: Reverse
Name: 158318476
Synonym: Franean1_6744
Alternate gene names: NA
Gene position: 8203640-8202315 (Counterclockwise)
Preceding gene: 158318482
Following gene: 158318475
Centisome position: 91.33
GC content: 75.94
Gene sequence:
>1326_bases ATGACCGACGAGAAAACACCCGCCGTCGATCCGGACGCCGCACGTGTCCTGGAGATCCTGCGGGATCATGAAGGTCCCGC GACCGCGTCGGAAATGCGGGTAGCGGCCGGGATGACGGTGCCCCAGTTGCGGCCAGTGTTGGACCGGCTGGCAGACGCCG GTCTGGTTCTGGCGTCCCAGCGGGACGGTGCCAGGGGGCGGCCCTGGCAGTGGGCCCTGATCCCCACCCTGGACGACGCC CCCACCGCCGACGATGCCACCGCATCCGACCCGCCACCCACTGACACCAGCGCACCGGTCGACGACGCCGTGCCGGCCGA CGACACCGTGCCGGTGATGACCGGACCAGCCGAAACCGTGGACACCCCGCCCGACCCGGTGGCCGCGCCGGACCCCGCCA CCACCGAGATCTCCGCGTCCGACCCGGCGCAGCGCCTGCCCACCGGGACCGCCGACCCGGAGCGGCAGGCGGCGAGCCCG GGAGACGCCCTCGAGGCCACGGCCCTCACGGTGCCGACACACGGGCCGGCCGAGGACGTGTCCGCCCCGGACCCCGCCAC CGCCGACCTGTCCACGGTGGAACCGGTCGAGACCGAGACGGACCCCAGCCCGGTGGCGGACCTCCCCGACACCGACCCGC CGATGCAGGAGCCGCCGACCGACCAGGACCGGCACCTCGGCACCTCCGCGCCGCTCGACGCTGCGCGGGCTGTCACCGCG AGCGAGCCCGCGCAGGATCCGGCACCCGAGGAGGACCCCGCCCCGCCGAACGCACCGGCCGACAGCACGGTGCCCGGCGA GAGCGCCGACACCTCGGCGCACGCTGACGAGCCGACCGGGATCGCTGCGGCGCCGGGTGGCCAGGCCATCCAGGCCCCGC CCGACGGCATCCCGAGCGCCGCCGGGGACGGGGCGGGCACGGCGGGCTGCGCGGCGTGGGCCTGCCCGGCACCGCAATGC CCGATACGGGCCGGCGGACCGCCGCCCACCAGCGGGCCCCAGCCTTCGCGGCGGCGGGCCCCGGCGAAGGCGCCACGGCC GGCCGGGGATCGGGCGGTGAACGGCGACGGGCAGCCCCGGTTGCCCTCCGGGGGGCTCACCGCGATGGTCCGGGATGTTC TGGCCGCGAACGCGGATGTGCCGTTGAGCGTGACCGAGATCAGCCGGGAAATCCCCGGACGGTCCTCCGGGGCGATCAAC GCCTCCTGCGAGGCGATGACTAGCCGTGGCGAGGTGTCCCTCGTCGAGGGCAGGCCGAAGCGCTACCGGATCACGGCCGC CGGCCTCGCGCTCACCACCACCGCCGCTGCCTCGACCGGCAGCTGA
Upstream 100 bases:
>100_bases CTGGACGTGGTTGATGGATATCGCTGGCTGAATTCCGTCGAATCGAGATACAGCTGATTGCGCACCCAGAAACCCGCACC CGAAATGGGGGTCGAGAACA
Downstream 100 bases:
>100_bases GCAGGCCCCGCCCCGCCGGCCTACTGGCCGGGGGGTTGTTCCCGGGCGGCGGGAATGCCGCCCGCCGCCCGGGACCCGAT TCGCCCCTACCCCTGCGGAG
Product: putative transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 440
Protein sequence:
>441_residues MTDEKTPAVDPDAARVLEILRDHEGPATASEMRVAAGMTVPQLRPVLDRLADAGLVLASQRDGARGRPWQWALIPTLDDA PTADDATASDPPPTDTSAPVDDAVPADDTVPVMTGPAETVDTPPDPVAAPDPATTEISASDPAQRLPTGTADPERQAASP GDALEATALTVPTHGPAEDVSAPDPATADLSTVEPVETETDPSPVADLPDTDPPMQEPPTDQDRHLGTSAPLDAARAVTA SEPAQDPAPEEDPAPPNAPADSTVPGESADTSAHADEPTGIAAAPGGQAIQAPPDGIPSAAGDGAGTAGCAAWACPAPQC PIRAGGPPPTSGPQPSRRRAPAKAPRPAGDRAVNGDGQPRLPSGGLTAMVRDVLAANADVPLSVTEISREIPGRSSGAIN ASCEAMTSRGEVSLVEGRPKRYRITAAGLALTTTAAASTGS
Sequences:
>Translated_441_residues MTDEKTPAVDPDAARVLEILRDHEGPATASEMRVAAGMTVPQLRPVLDRLADAGLVLASQRDGARGRPWQWALIPTLDDA PTADDATASDPPPTDTSAPVDDAVPADDTVPVMTGPAETVDTPPDPVAAPDPATTEISASDPAQRLPTGTADPERQAASP GDALEATALTVPTHGPAEDVSAPDPATADLSTVEPVETETDPSPVADLPDTDPPMQEPPTDQDRHLGTSAPLDAARAVTA SEPAQDPAPEEDPAPPNAPADSTVPGESADTSAHADEPTGIAAAPGGQAIQAPPDGIPSAAGDGAGTAGCAAWACPAPQC PIRAGGPPPTSGPQPSRRRAPAKAPRPAGDRAVNGDGQPRLPSGGLTAMVRDVLAANADVPLSVTEISREIPGRSSGAIN ASCEAMTSRGEVSLVEGRPKRYRITAAGLALTTTAAASTGS >Mature_440_residues TDEKTPAVDPDAARVLEILRDHEGPATASEMRVAAGMTVPQLRPVLDRLADAGLVLASQRDGARGRPWQWALIPTLDDAP TADDATASDPPPTDTSAPVDDAVPADDTVPVMTGPAETVDTPPDPVAAPDPATTEISASDPAQRLPTGTADPERQAASPG DALEATALTVPTHGPAEDVSAPDPATADLSTVEPVETETDPSPVADLPDTDPPMQEPPTDQDRHLGTSAPLDAARAVTAS EPAQDPAPEEDPAPPNAPADSTVPGESADTSAHADEPTGIAAAPGGQAIQAPPDGIPSAAGDGAGTAGCAAWACPAPQCP IRAGGPPPTSGPQPSRRRAPAKAPRPAGDRAVNGDGQPRLPSGGLTAMVRDVLAANADVPLSVTEISREIPGRSSGAINA SCEAMTSRGEVSLVEGRPKRYRITAAGLALTTTAAASTGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44279; Mature: 44147
Theoretical pI: Translated: 3.96; Mature: 3.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDEKTPAVDPDAARVLEILRDHEGPATASEMRVAAGMTVPQLRPVLDRLADAGLVLASQ CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEC RDGARGRPWQWALIPTLDDAPTADDATASDPPPTDTSAPVDDAVPADDTVPVMTGPAETV CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHC DTPPDPVAAPDPATTEISASDPAQRLPTGTADPERQAASPGDALEATALTVPTHGPAEDV CCCCCCCCCCCCCCCEECCCCCHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCHHCC SAPDPATADLSTVEPVETETDPSPVADLPDTDPPMQEPPTDQDRHLGTSAPLDAARAVTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHC SEPAQDPAPEEDPAPPNAPADSTVPGESADTSAHADEPTGIAAAPGGQAIQAPPDGIPSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCCC AGDGAGTAGCAAWACPAPQCPIRAGGPPPTSGPQPSRRRAPAKAPRPAGDRAVNGDGQPR CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC LPSGGLTAMVRDVLAANADVPLSVTEISREIPGRSSGAINASCEAMTSRGEVSLVEGRPK CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCC RYRITAAGLALTTTAAASTGS EEEEEECCEEEEHHHHCCCCC >Mature Secondary Structure TDEKTPAVDPDAARVLEILRDHEGPATASEMRVAAGMTVPQLRPVLDRLADAGLVLASQ CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEC RDGARGRPWQWALIPTLDDAPTADDATASDPPPTDTSAPVDDAVPADDTVPVMTGPAETV CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHC DTPPDPVAAPDPATTEISASDPAQRLPTGTADPERQAASPGDALEATALTVPTHGPAEDV CCCCCCCCCCCCCCCEECCCCCHHHCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCHHCC SAPDPATADLSTVEPVETETDPSPVADLPDTDPPMQEPPTDQDRHLGTSAPLDAARAVTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHC SEPAQDPAPEEDPAPPNAPADSTVPGESADTSAHADEPTGIAAAPGGQAIQAPPDGIPSA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCCC AGDGAGTAGCAAWACPAPQCPIRAGGPPPTSGPQPSRRRAPAKAPRPAGDRAVNGDGQPR CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC LPSGGLTAMVRDVLAANADVPLSVTEISREIPGRSSGAINASCEAMTSRGEVSLVEGRPK CCCCCHHHHHHHHHHCCCCCCEEHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEECCCCC RYRITAAGLALTTTAAASTGS EEEEEECCEEEEHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA