| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318458
Identifier: 158318458
GI number: 158318458
Start: 8178674
End: 8179909
Strand: Direct
Name: 158318458
Synonym: Franean1_6726
Alternate gene names: NA
Gene position: 8178674-8179909 (Clockwise)
Preceding gene: 158318457
Following gene: 158318459
Centisome position: 91.06
GC content: 71.36
Gene sequence:
>1236_bases GTGGTCGTGTGCGTGCTGGCGGTAGGTGCGGGTGTGCTGGTGGCGTCGGCGGGGGTGGCGGGGGCGCAGACCGCGGTCCC GGCCGCGCCGTCCGCGACCACCCCGGCTCCGGCTGGCGCACCGGCGCAGCGGGTGGAACCCGCCGCCCCCAGGCCGCAGG TCCCCCCGGTCGTGCCGGCCCCCTCCGGCGGGGATGCGCCCGCTCCCTCCGGCGGGCCCTCCCCCGAGGGCTCCGAGGAG GCACCGGCGCCGGGGGAGGTGCCTCCGCCGCCGTCCGCGGAGCCGGCCCCGACCGCCCCCGGGTCGGAGAGCGACGGTGG CGGCGGTGGGGTGGTGGGCGCGCTGTTCGGCTGGGCGGACATCCCCGGCCGGATCCTTCGGGCGATCAATGGCTGGTTCG AGGGGCTCGTCGAGGCGGCGCTGGAGCCGGTCGTGCGTCTGCTCGGCCAGACCATTTTGAGTACTCCGGATGTGACGGAG CAGCCGCGGATCCGTGAGCTGTGGGCGGGCAGTGTGCTGATCGCGAACAGTGTGATGCTGCTGGTGTTGATGGCTGGTGG GGTCGCGGCGATGGGTTACGACAGTGTGCAGACCCGCGCCACCGCGAAAGAGATGCTGCCCCGGATGATTCTCGGGTTCG GGGAGGCGAACCTGAGCCTGCCGCTGATCGGCTGGTCGATCGATGCCGCGAACGCGCTGAGCCGGGCGTTCACGAACATG AGTGGGCTCGATGCCAGCGGGGCGTTCAGTGTGCTGCTGACGGTGCTGGCGGCCGGGCGGATCCACGGCATCTTCTTCGT CTTGTTGCTGATCGGCGTGGTCGGGATGATCGTGATGCTGCTGGTCGGCTGGGTGATCCGGGTGATCGTGCTGATGGGGC TGGCGGTCGCCGGTCCGCTGATGCTGATCTGCCGGGGCCTGCCGTGGACGGAGCACATCGCGAACCTGTACTGGCGGGCC ACAGCCGGCTGCCTGGCGGTGCAGGTCGGCCAGTCGGTGCTGCTTGTCCTGGGCGTGCGGGTGCTGTTCGCCAGCGATGA CGGGGCGTTCCATCCGGTGGGCGTGGCGGACAGTCTCGGGAACATCCTGACCGCCGCCGGCCTGTTCTACGTCGCGATCC GCCTGCAATCCACCGTCATGCGCACCGTCATGGGTGGCGGGCGCTCCACGGTCGTCTCACTGGTGAAGTACCGGCTGCTG CGCAAGGGCCTGCAGCATCTCGGCATTCCCCTCTGA
Upstream 100 bases:
>100_bases CGCCGTTGGTGTTGAAGGCGTTGCGTTCGGTAGTCGGCGCCTGATGCTCCGGGCAGGGCAGACGCCGCGACAGCCACGGG CGTGGGGGTGGCGGGCCGGG
Downstream 100 bases:
>100_bases CCGCCGCCCCCGGCGCTCTCCCTCTCTCCCTCTTGTCGCTCTGTGGTCTGAAAGGCCGTGCTCGCTATGCCCGAAACATC CAGATTTGATAGGGTTCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MVVCVLAVGAGVLVASAGVAGAQTAVPAAPSATTPAPAGAPAQRVEPAAPRPQVPPVVPAPSGGDAPAPSGGPSPEGSEE APAPGEVPPPPSAEPAPTAPGSESDGGGGGVVGALFGWADIPGRILRAINGWFEGLVEAALEPVVRLLGQTILSTPDVTE QPRIRELWAGSVLIANSVMLLVLMAGGVAAMGYDSVQTRATAKEMLPRMILGFGEANLSLPLIGWSIDAANALSRAFTNM SGLDASGAFSVLLTVLAAGRIHGIFFVLLLIGVVGMIVMLLVGWVIRVIVLMGLAVAGPLMLICRGLPWTEHIANLYWRA TAGCLAVQVGQSVLLVLGVRVLFASDDGAFHPVGVADSLGNILTAAGLFYVAIRLQSTVMRTVMGGGRSTVVSLVKYRLL RKGLQHLGIPL
Sequences:
>Translated_411_residues MVVCVLAVGAGVLVASAGVAGAQTAVPAAPSATTPAPAGAPAQRVEPAAPRPQVPPVVPAPSGGDAPAPSGGPSPEGSEE APAPGEVPPPPSAEPAPTAPGSESDGGGGGVVGALFGWADIPGRILRAINGWFEGLVEAALEPVVRLLGQTILSTPDVTE QPRIRELWAGSVLIANSVMLLVLMAGGVAAMGYDSVQTRATAKEMLPRMILGFGEANLSLPLIGWSIDAANALSRAFTNM SGLDASGAFSVLLTVLAAGRIHGIFFVLLLIGVVGMIVMLLVGWVIRVIVLMGLAVAGPLMLICRGLPWTEHIANLYWRA TAGCLAVQVGQSVLLVLGVRVLFASDDGAFHPVGVADSLGNILTAAGLFYVAIRLQSTVMRTVMGGGRSTVVSLVKYRLL RKGLQHLGIPL >Mature_411_residues MVVCVLAVGAGVLVASAGVAGAQTAVPAAPSATTPAPAGAPAQRVEPAAPRPQVPPVVPAPSGGDAPAPSGGPSPEGSEE APAPGEVPPPPSAEPAPTAPGSESDGGGGGVVGALFGWADIPGRILRAINGWFEGLVEAALEPVVRLLGQTILSTPDVTE QPRIRELWAGSVLIANSVMLLVLMAGGVAAMGYDSVQTRATAKEMLPRMILGFGEANLSLPLIGWSIDAANALSRAFTNM SGLDASGAFSVLLTVLAAGRIHGIFFVLLLIGVVGMIVMLLVGWVIRVIVLMGLAVAGPLMLICRGLPWTEHIANLYWRA TAGCLAVQVGQSVLLVLGVRVLFASDDGAFHPVGVADSLGNILTAAGLFYVAIRLQSTVMRTVMGGGRSTVVSLVKYRLL RKGLQHLGIPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41778; Mature: 41778
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00589 PTS_HPR_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVCVLAVGAGVLVASAGVAGAQTAVPAAPSATTPAPAGAPAQRVEPAAPRPQVPPVVPA CEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC PSGGDAPAPSGGPSPEGSEEAPAPGEVPPPPSAEPAPTAPGSESDGGGGGVVGALFGWAD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC IPGRILRAINGWFEGLVEAALEPVVRLLGQTILSTPDVTEQPRIRELWAGSVLIANSVML CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHH LVLMAGGVAAMGYDSVQTRATAKEMLPRMILGFGEANLSLPLIGWSIDAANALSRAFTNM HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCC SGLDASGAFSVLLTVLAAGRIHGIFFVLLLIGVVGMIVMLLVGWVIRVIVLMGLAVAGPL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLICRGLPWTEHIANLYWRATAGCLAVQVGQSVLLVLGVRVLFASDDGAFHPVGVADSLG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHH NILTAAGLFYVAIRLQSTVMRTVMGGGRSTVVSLVKYRLLRKGLQHLGIPL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MVVCVLAVGAGVLVASAGVAGAQTAVPAAPSATTPAPAGAPAQRVEPAAPRPQVPPVVPA CEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC PSGGDAPAPSGGPSPEGSEEAPAPGEVPPPPSAEPAPTAPGSESDGGGGGVVGALFGWAD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC IPGRILRAINGWFEGLVEAALEPVVRLLGQTILSTPDVTEQPRIRELWAGSVLIANSVML CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHH LVLMAGGVAAMGYDSVQTRATAKEMLPRMILGFGEANLSLPLIGWSIDAANALSRAFTNM HHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCC SGLDASGAFSVLLTVLAAGRIHGIFFVLLLIGVVGMIVMLLVGWVIRVIVLMGLAVAGPL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLICRGLPWTEHIANLYWRATAGCLAVQVGQSVLLVLGVRVLFASDDGAFHPVGVADSLG HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHH NILTAAGLFYVAIRLQSTVMRTVMGGGRSTVVSLVKYRLLRKGLQHLGIPL HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA