| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318411
Identifier: 158318411
GI number: 158318411
Start: 8110547
End: 8111881
Strand: Reverse
Name: 158318411
Synonym: Franean1_6676
Alternate gene names: NA
Gene position: 8111881-8110547 (Counterclockwise)
Preceding gene: 158318412
Following gene: 158318410
Centisome position: 90.31
GC content: 66.37
Gene sequence:
>1335_bases ATGAGCACCCTGCTGCCCTGGCTGTTGCTTGTGGCCTTCCTCCGGCCAATGATCGAGATCTTCATTCTTGCCGCGGGTGA GTGGTGGTTCCACACGACCTTCCGGCAGAACCGGGATCTCTTCTCGAGATACATTATCCAGATCACCACCGTCGGCCGGG AACAGGACCGGGTCAACGAGATCATCCGGGAGATCCGCTCGTTCCCGATGACGATGAACTACGAGATCTGGGTGACCAAC GAGCCCGGGAACGGCGACATCTACCCCGAGGCGGACCGGGTCATCACGGTGCCCACCGACTTCACCTGCGTGGCCCAGTA CAAGGCGCGTGCCCTGGAGTTCAGCCGGATCGTCCGCCAGCATCTCGGCTACGACACGGCCGATACAAAGATCACGTTTC TCGATGACGACACGTCTCCGACGTGGGAGTACCTCGAGACCGCCTACGCGGCCGACTACGACATCTGCCAGGGCGTGACG GCCCCGCGCATCGACTACGGCAGCGGGCCGTTCGCGCACTTCATCCTGAGCCACATCGATGACCTGCGGTTCCACAACTG CATGACCTACTGCTCCTCCTTCCAGGGAATCCTCGGGCGGCCGCTGTTCGTCCACGGGGAGGGCCTCACCATCACCGGTC ACACCGAGCGGACGGTCACCTGGAACTGGCGGATCTTCGCCTCCGAGGATCTCACCTTCGGCTGCAACGCGGCGGCGGCC GGTCTGCGCTGGGGCTTCTTCCACGAGTACATCCAGCTCACCTCCCCGTGGACGTGGCAGGCCTACTTCAAGCAGCGCCG CCGGTGGATGTGGGGCAACATCCACGCCATCGTGAACCGCGACGTGCTCCCGCTCGGCGCCGCGATCAGAATCGCGGTGC GGTACTTCCTCAGCCTGTTCACGTTTCTCGCGTCGGGTTCGGCGGTCGTCCTGATCCTCACGGACACGATCGAGGTGGCG GGCTGGGCGCATTCGCTCTTCTGGTGTTCGCTGGCGGTCTGGCTGGTGAACTTCGGGCTGAGTGGCTGGGTCAACGCCGG CCTGCGCCAGCCCGGGGTGAGCAGCGCGAGATTCTGGACGAACCGCGTCCTGCAGAGCCTCGCCGCCGTGGTCCTGGCGC CCGTCACGGCGACGTTCACGATCGTCGCGCTCGTCGCGACGCTCTACATGGGGAACCCGCGCAGCTTCGAGGTCATCGCC AAGACCGCGGCCACCAGCGGCCAGCGCGACCGGGACCGGGACCGGGACGGCACCACCGGCACTGCCCGGGACGACGAGGC CGTGGCCGGCGGGGGCCGCGTGCCCGCGTCCGTCGCGGGGGAGGGCAACCGATGA
Upstream 100 bases:
>100_bases GGGCGGGGCTGGCCTCCGCCCGCGCGCTCTGGTCGCCCGACCGGCTTCCACGGCAGCCGCGGGACTCCCGTGGCGTCGAG GCGACGGAAGGCGCGCCCCG
Downstream 100 bases:
>100_bases CGACCCGCCCGACCCGCCAGCCCTACCCTCCCCATCCTCCTCAGCCACCTCATGAGCCACCTCTCGGGTTGCACTCGCCC CACGCGCCGTATCAGCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 444; Mature: 443
Protein sequence:
>444_residues MSTLLPWLLLVAFLRPMIEIFILAAGEWWFHTTFRQNRDLFSRYIIQITTVGREQDRVNEIIREIRSFPMTMNYEIWVTN EPGNGDIYPEADRVITVPTDFTCVAQYKARALEFSRIVRQHLGYDTADTKITFLDDDTSPTWEYLETAYAADYDICQGVT APRIDYGSGPFAHFILSHIDDLRFHNCMTYCSSFQGILGRPLFVHGEGLTITGHTERTVTWNWRIFASEDLTFGCNAAAA GLRWGFFHEYIQLTSPWTWQAYFKQRRRWMWGNIHAIVNRDVLPLGAAIRIAVRYFLSLFTFLASGSAVVLILTDTIEVA GWAHSLFWCSLAVWLVNFGLSGWVNAGLRQPGVSSARFWTNRVLQSLAAVVLAPVTATFTIVALVATLYMGNPRSFEVIA KTAATSGQRDRDRDRDGTTGTARDDEAVAGGGRVPASVAGEGNR
Sequences:
>Translated_444_residues MSTLLPWLLLVAFLRPMIEIFILAAGEWWFHTTFRQNRDLFSRYIIQITTVGREQDRVNEIIREIRSFPMTMNYEIWVTN EPGNGDIYPEADRVITVPTDFTCVAQYKARALEFSRIVRQHLGYDTADTKITFLDDDTSPTWEYLETAYAADYDICQGVT APRIDYGSGPFAHFILSHIDDLRFHNCMTYCSSFQGILGRPLFVHGEGLTITGHTERTVTWNWRIFASEDLTFGCNAAAA GLRWGFFHEYIQLTSPWTWQAYFKQRRRWMWGNIHAIVNRDVLPLGAAIRIAVRYFLSLFTFLASGSAVVLILTDTIEVA GWAHSLFWCSLAVWLVNFGLSGWVNAGLRQPGVSSARFWTNRVLQSLAAVVLAPVTATFTIVALVATLYMGNPRSFEVIA KTAATSGQRDRDRDRDGTTGTARDDEAVAGGGRVPASVAGEGNR >Mature_443_residues STLLPWLLLVAFLRPMIEIFILAAGEWWFHTTFRQNRDLFSRYIIQITTVGREQDRVNEIIREIRSFPMTMNYEIWVTNE PGNGDIYPEADRVITVPTDFTCVAQYKARALEFSRIVRQHLGYDTADTKITFLDDDTSPTWEYLETAYAADYDICQGVTA PRIDYGSGPFAHFILSHIDDLRFHNCMTYCSSFQGILGRPLFVHGEGLTITGHTERTVTWNWRIFASEDLTFGCNAAAAG LRWGFFHEYIQLTSPWTWQAYFKQRRRWMWGNIHAIVNRDVLPLGAAIRIAVRYFLSLFTFLASGSAVVLILTDTIEVAG WAHSLFWCSLAVWLVNFGLSGWVNAGLRQPGVSSARFWTNRVLQSLAAVVLAPVTATFTIVALVATLYMGNPRSFEVIAK TAATSGQRDRDRDRDGTTGTARDDEAVAGGGRVPASVAGEGNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50087; Mature: 49956
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLLPWLLLVAFLRPMIEIFILAAGEWWFHTTFRQNRDLFSRYIIQITTVGREQDRVNE CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHEEEEECCCCHHHHHH IIREIRSFPMTMNYEIWVTNEPGNGDIYPEADRVITVPTDFTCVAQYKARALEFSRIVRQ HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH HLGYDTADTKITFLDDDTSPTWEYLETAYAADYDICQGVTAPRIDYGSGPFAHFILSHID HCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH DLRFHNCMTYCSSFQGILGRPLFVHGEGLTITGHTERTVTWNWRIFASEDLTFGCNAAAA HHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHH GLRWGFFHEYIQLTSPWTWQAYFKQRRRWMWGNIHAIVNRDVLPLGAAIRIAVRYFLSLF HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH TFLASGSAVVLILTDTIEVAGWAHSLFWCSLAVWLVNFGLSGWVNAGLRQPGVSSARFWT HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHH NRVLQSLAAVVLAPVTATFTIVALVATLYMGNPRSFEVIAKTAATSGQRDRDRDRDGTTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHCCCCCCCCCCCCCCCC TARDDEAVAGGGRVPASVAGEGNR CCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STLLPWLLLVAFLRPMIEIFILAAGEWWFHTTFRQNRDLFSRYIIQITTVGREQDRVNE CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHEEEEECCCCHHHHHH IIREIRSFPMTMNYEIWVTNEPGNGDIYPEADRVITVPTDFTCVAQYKARALEFSRIVRQ HHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHH HLGYDTADTKITFLDDDTSPTWEYLETAYAADYDICQGVTAPRIDYGSGPFAHFILSHID HCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHH DLRFHNCMTYCSSFQGILGRPLFVHGEGLTITGHTERTVTWNWRIFASEDLTFGCNAAAA HHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCCCHHHH GLRWGFFHEYIQLTSPWTWQAYFKQRRRWMWGNIHAIVNRDVLPLGAAIRIAVRYFLSLF HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHH TFLASGSAVVLILTDTIEVAGWAHSLFWCSLAVWLVNFGLSGWVNAGLRQPGVSSARFWT HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHH NRVLQSLAAVVLAPVTATFTIVALVATLYMGNPRSFEVIAKTAATSGQRDRDRDRDGTTG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEHHHHCCCCCCCCCCCCCCCC TARDDEAVAGGGRVPASVAGEGNR CCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA