| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318378
Identifier: 158318378
GI number: 158318378
Start: 8072401
End: 8073054
Strand: Direct
Name: 158318378
Synonym: Franean1_6643
Alternate gene names: NA
Gene position: 8072401-8073054 (Clockwise)
Preceding gene: 158318377
Following gene: 158318380
Centisome position: 89.87
GC content: 69.11
Gene sequence:
>654_bases GTGTCTCGTGTACGAGTCCACAACTTCTCCGTCTCCCTCGACGGTTATGGCACCGGCGAGGGGCAGAGCCTCGAAAGGCC GTTCGGTCACGCCGAGGGGCGGTTGCACGACTGGTTCTTCCACACCAGGTCGTTCCGCGCGATGCACGGCGAGGACGGCG GAGACACCGGGGTGGACGACGCACTTGCCGGAGCATGGGAGCCGGGCATCGGCGCGGAGATCATGGGGCGGAACAAGTTC GGGCCGCAGCGCGGCCCCTGGGAGGACCACGAATGGACGGGGTGGTGGGGCGAGGATCCCCCGTTCCACACGCCGGTCTT CGTCCTGACCCACCACCCCCGCCCGCCGTTGGTGATGAAGGGGGGCACGACGTTCCACTTCATCGACGCCACCCCGCAGG AGGCGCTCCGCCAGGCACGGGAGGCCGCCGGCGGCCTCGACGTCCGGATCGGTGGCGGGCCGACCATGGTCCGCGACTTC CTGGCAGCGGATCTGATCGACCACCTGCACGTGGCCGTCGTGCCGATCCTCCTCGGCCGCGGGGTGCGGCTGTGGGAGGG CCTCGAGGAGATGGAGAAGCGCTTCACCGTCGAATCCACGACGACCCCCAGCGGCATCACCCACGTGACCTTTACCCGAC CCGCCGATCAATGA
Upstream 100 bases:
>100_bases CTCGGCCGCCCACTGATCAGACATCCGAACGCCGCGTTGACGACCGTCGCGTAGTCGCGTCGTCGCGACCGCGCATTTTA CGAGAGCAGGAGGTCGGCCC
Downstream 100 bases:
>100_bases TGAAACGCCGCCCAGGGTAATTGACTTGTCTTGCGCGAGCCGGCGTCCCGGGAGACTGGCTCTCGAAGATCAGGCAAGGC GTACGGATTCTGGCTGGCCG
Product: deaminase-reductase domain-containing protein
Products: NA
Alternate protein names: Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Riboflavin Biosynthesis Protein RibD; Bifunctional Deaminase-Reductase-Like; Bifunctional Deaminase-Reductase-Like Protein; Dihydrofolate Reductase; Riboflavin Biosynthesis Protein; Deaminase-Reductase; Dihydrofolate Reductase Protein; Bifunctional Deaminase-Reductase C-Terminal Protein; Deaminase/Reductase; RibD Domain-Containing Protein; 5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase; Riboflavin Biosynthesis Protein RibD Domain Protein; Bifunctional Deaminase-Reductase C-Terminal
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MSRVRVHNFSVSLDGYGTGEGQSLERPFGHAEGRLHDWFFHTRSFRAMHGEDGGDTGVDDALAGAWEPGIGAEIMGRNKF GPQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMKGGTTFHFIDATPQEALRQAREAAGGLDVRIGGGPTMVRDF LAADLIDHLHVAVVPILLGRGVRLWEGLEEMEKRFTVESTTTPSGITHVTFTRPADQ
Sequences:
>Translated_217_residues MSRVRVHNFSVSLDGYGTGEGQSLERPFGHAEGRLHDWFFHTRSFRAMHGEDGGDTGVDDALAGAWEPGIGAEIMGRNKF GPQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMKGGTTFHFIDATPQEALRQAREAAGGLDVRIGGGPTMVRDF LAADLIDHLHVAVVPILLGRGVRLWEGLEEMEKRFTVESTTTPSGITHVTFTRPADQ >Mature_216_residues SRVRVHNFSVSLDGYGTGEGQSLERPFGHAEGRLHDWFFHTRSFRAMHGEDGGDTGVDDALAGAWEPGIGAEIMGRNKFG PQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMKGGTTFHFIDATPQEALRQAREAAGGLDVRIGGGPTMVRDFL AADLIDHLHVAVVPILLGRGVRLWEGLEEMEKRFTVESTTTPSGITHVTFTRPADQ
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24036; Mature: 23905
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVRVHNFSVSLDGYGTGEGQSLERPFGHAEGRLHDWFFHTRSFRAMHGEDGGDTGVDD CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHEECCCCCCCCCCHH ALAGAWEPGIGAEIMGRNKFGPQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMK HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE GGTTFHFIDATPQEALRQAREAAGGLDVRIGGGPTMVRDFLAADLIDHLHVAVVPILLGR CCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GVRLWEGLEEMEKRFTVESTTTPSGITHVTFTRPADQ CCHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCC >Mature Secondary Structure SRVRVHNFSVSLDGYGTGEGQSLERPFGHAEGRLHDWFFHTRSFRAMHGEDGGDTGVDD CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHEECCCCCCCCCCHH ALAGAWEPGIGAEIMGRNKFGPQRGPWEDHEWTGWWGEDPPFHTPVFVLTHHPRPPLVMK HHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE GGTTFHFIDATPQEALRQAREAAGGLDVRIGGGPTMVRDFLAADLIDHLHVAVVPILLGR CCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC GVRLWEGLEEMEKRFTVESTTTPSGITHVTFTRPADQ CCHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA