| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318357
Identifier: 158318357
GI number: 158318357
Start: 8055562
End: 8056164
Strand: Reverse
Name: 158318357
Synonym: Franean1_6622
Alternate gene names: NA
Gene position: 8056164-8055562 (Counterclockwise)
Preceding gene: 158318360
Following gene: 158318356
Centisome position: 89.69
GC content: 67.66
Gene sequence:
>603_bases GTGCCCACGCTCAAGGAGGCAGGCCATGACGCAGCGGGTTCGGGTCCACTGCTTCAACGTCACGAGGGACGGGTTCGGGG CAGGCGAGGATCAGAGCTTCGAACGCCCGTTCGGCCAGGCGGCACCCGAGGGCTCGACGACTACATCGCCCGCGACTTCA CCCGCAACATCGGCGCGGAGATCATGGGGCGGAACAAGTTCGGTCCGACCCGCGGCCCCTGGCCGGACCACGAGTGGAAG GGCTGGTGGGGAGACGAGCCTCCCTTCCACACGCCGGTCTTCGTGCTCACGCATCACCTTCGACCGTCGTTCACCCTGAG CGACACGACGTTCCACTTCCTCGACACGACGCCGCACGAGGCGCTGAAGCAGGCGAAGGCCGCTGCGGCCGGCCGGGACG TGCGCATCGGCGGTGGCGCCACGACCATTCGCGAGTTCCTCGACGCGGACCTGATCGACGAAATGCACATCGCCGTCGCT CCGTGTGAACTCGGCAGTGGTCTCCGCCTCTGGGACAGCCCGGACGAGCTGACCGACCGATTCCACGTGGAGCGCGTGCC AAGGCCGAGCGGAGTCGTGCACCACTTCTTCTGGCGGCGATAG
Upstream 100 bases:
>100_bases GACATGGCTGCCGCGACACTACGCAGCCGAAATTCTCCGCCGTCGTTGTCGCGCGGGGCGCGTCGGCGACGACCACCTGT CAGGCGGCCGCGACAGGCGG
Downstream 100 bases:
>100_bases GTACTGGCGGCGGCAGACGCCGGCCGAACGCCGCCCCCACCAGGCGTCCGGCCGGCCACCGCGGCATGGCCGGCTACTGT CACGGTGTGGGACTGCACCT
Product: DNA-binding protein
Products: NA
Alternate protein names: Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase Domain-Containing Protein; Bifunctional Deaminase-Reductase-Like; Riboflavin Biosynthesis Protein RibD; Bifunctional Deaminase-Reductase-Like Protein; Dihydrofolate Reductase; Deaminase-Reductase; Riboflavin Biosynthesis Protein; Dihydrofolate Reductase Protein; Bifunctional Deaminase-Reductase C-Terminal Protein; Deaminase/Reductase; RibD Domain-Containing Protein; 5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase; Riboflavin Biosynthesis Protein RibD Domain Protein; Bifunctional Deaminase-Reductase C-Terminal
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MPTLKEAGHDAAGSGPLLQRHEGRVRGRRGSELRTPVRPGGTRGLDDYIARDFTRNIGAEIMGRNKFGPTRGPWPDHEWK GWWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHEALKQAKAAAAGRDVRIGGGATTIREFLDADLIDEMHIAVA PCELGSGLRLWDSPDELTDRFHVERVPRPSGVVHHFFWRR
Sequences:
>Translated_200_residues MPTLKEAGHDAAGSGPLLQRHEGRVRGRRGSELRTPVRPGGTRGLDDYIARDFTRNIGAEIMGRNKFGPTRGPWPDHEWK GWWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHEALKQAKAAAAGRDVRIGGGATTIREFLDADLIDEMHIAVA PCELGSGLRLWDSPDELTDRFHVERVPRPSGVVHHFFWRR >Mature_199_residues PTLKEAGHDAAGSGPLLQRHEGRVRGRRGSELRTPVRPGGTRGLDDYIARDFTRNIGAEIMGRNKFGPTRGPWPDHEWKG WWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHEALKQAKAAAAGRDVRIGGGATTIREFLDADLIDEMHIAVAP CELGSGLRLWDSPDELTDRFHVERVPRPSGVVHHFFWRR
Specific function: Unknown
COG id: COG0262
COG function: function code H; Dihydrofolate reductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22493; Mature: 22361
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLKEAGHDAAGSGPLLQRHEGRVRGRRGSELRTPVRPGGTRGLDDYIARDFTRNIGAE CCCCHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH IMGRNKFGPTRGPWPDHEWKGWWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHE EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCEEEEECCCHHH ALKQAKAAAAGRDVRIGGGATTIREFLDADLIDEMHIAVAPCELGSGLRLWDSPDELTDR HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHH FHVERVPRPSGVVHHFFWRR HHHHCCCCCCCHHHHHHHCC >Mature Secondary Structure PTLKEAGHDAAGSGPLLQRHEGRVRGRRGSELRTPVRPGGTRGLDDYIARDFTRNIGAE CCCHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH IMGRNKFGPTRGPWPDHEWKGWWGDEPPFHTPVFVLTHHLRPSFTLSDTTFHFLDTTPHE EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCEEEEECCCHHH ALKQAKAAAAGRDVRIGGGATTIREFLDADLIDEMHIAVAPCELGSGLRLWDSPDELTDR HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHHHHH FHVERVPRPSGVVHHFFWRR HHHHCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA