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The map label for this gene is cspA [H]

Identifier: 158318310

GI number: 158318310

Start: 8000117

End: 8000320

Strand: Reverse

Name: cspA [H]

Synonym: Franean1_6575

Alternate gene names: 158318310

Gene position: 8000320-8000117 (Counterclockwise)

Preceding gene: 158318311

Following gene: 158318307

Centisome position: 89.07

GC content: 65.69

Gene sequence:

>204_bases
GTGGCTCAGGGCACGGTGAAGTGGTTCAACTCGGAGAAGGGCTTCGGCTTCATCTCCGTGGACGGCGGCGGGTCTGACGT
CTTCGTCCACTACAGCGCAATCCAGATGGACGGCTACAAGGCACTCGAGGAGGGCCAGCGGGTCGAGTTCCAGGTGACCC
AGGGCCAGAAGGGCCCGCAGGCCGACGCCGTCCGCGTCGTCTGA

Upstream 100 bases:

>100_bases
GACACGGCGGAACAACGCGGCGGCGAATCGTATCGCTGTCACGTTCGGCCCGGGGCCCGCGCGGTGCGGGTCCTGACTGC
ACCAGCAGGGAGAACGGCAC

Downstream 100 bases:

>100_bases
GCCACGAGTAGCAGTAGAACCAGGTTTGGTCAGCCCGCCCGTCGGACGTCTCCGACGGGCGGGCTGACCGTTTTTCGGCG
GGATCCACGGGTCTTGCGGA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQADAVRVV

Sequences:

>Translated_67_residues
MAQGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQADAVRVV
>Mature_66_residues
AQGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQADAVRVV

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=62.9032258064516, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=59.7014925373134, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=63.9344262295082, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=57.3770491803279, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=57.8125, Blast_Score=79, Evalue=5e-17,
Organism=Escherichia coli, GI1787834, Length=58, Percent_Identity=60.3448275862069, Blast_Score=76, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983217, Length=63, Percent_Identity=41.2698412698413, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=45.9016393442623, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7284; Mature: 7153

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQ
CCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCC
ADAVRVV
CCEEEEC
>Mature Secondary Structure 
AQGTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMDGYKALEEGQRVEFQVTQGQKGPQ
CCCEEEEECCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCC
ADAVRVV
CCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA