| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318261
Identifier: 158318261
GI number: 158318261
Start: 7933863
End: 7935599
Strand: Reverse
Name: 158318261
Synonym: Franean1_6526
Alternate gene names: NA
Gene position: 7935599-7933863 (Counterclockwise)
Preceding gene: 158318264
Following gene: 158318259
Centisome position: 88.35
GC content: 74.96
Gene sequence:
>1737_bases ATGATGTCCACGGCGGACGGCACACCTGACCTTCCTGACGCACCGGCGGGCGCACCGACGGGCGCGCCGCCGTCGGTGCT CCTCGACGCGCCGATCAGCGCCGTGGTCGTCTATCCCACCGCCGCGCGCGTGACCCGCCGTGGCCGGTTCGATGTCGCGA CGCTCGGCTCGCCGTCCGAGCGGGTCGAGGTGACTCTCAGCGGGCTGCCGCTCGAGCTCGACGAGGACTCGGTGCGGGTC AGCGGCACCGGCTCCGCGCGGGTGCTCGGGGTGCGGGTCGTCTCCCAGGCCCGGGCTACCCCCGACGCCGGTGCCCTCGC CGACCTGCGCGCCCGCCAGGCCGAGCTGCGCGCGCACCTGGCCGAGATCGGCGACGAGGACGAGACCGAGCGGGCCCGTC GCTCCTTCCTCGACGTGGCCGCCCGGGTGGGAGCCGGCGCCCTCGCGCGCGGCTGGGCACACGAAGGCACCGACCGCGAG GGCGACGGGCCCGGGGACGCGGCAGCCCGGCTGGTCACTGTCGGCGACGCGTTCGCGGCGCAGATGTCGGCCGTCCACGC GCGCCGGCGGGCGCTCGCCGAGCGGCGGAAGGAGACGGAACGGGAGCTGACCGTGCTCGGCCGGGTCATCGAGGCCCGCC ACGCGCGGCCCGAGCCGGACACCCGCGCGATCGTCGTCGACCTCGAGCCGCCGACGGCCACCGAAGGCCCGGCGGAGGGC GTGCTGGTCGACAGGACAGCCTCGCTGGTGGACCTGGAGGTCTCCTACCTGGTCCGTTCCGCCTCCTGGAGATCCGGCTA CGACGCACGGCTGGACGGCGAGCGGGTCACCCTGACCTGGTTCGCGATGATCAGTCAGCGCACCGGCGAGGACTGGCCCG TGACGGACCTGCGGCTGTCCACGGCCCGCCCGTCCAGCGGCGTCGACCTGCCCGAGCTGAGCCCGCAGTATGTGGACATC GCCCGCCCGCGGGTCCTTCCCCGCGGGCGGGCCAAGGCGTCCGGCGAAGGCAGGGGCGGTGGCGGCGACGGCATGACGAC CTTCATGCCGGCGGCGATGGCGGCGCCGGCACAGGCCCCGCCGCCGATGGCTGCCGCCGAGGCCACGCTGGAGTCGGCCG GCCCCGCGTCGACCTACCGCCCGCCGCGGCCGGTGGCGGTACCCGCGGACGGGGACCCGCACCGCACCACCGTGGCAGTG ATCGAGCTCGACGCCGTTCTCGACCACGTCACCGTGCCCAAGCTCGCCGCCGAGGCGCTGTTGCGTGCCGCGGTCGTGAA CACCTCGTCGCACACGTTGCTGCCAGGTAAGGCGTCGGTCTTCCACGGCCCGGAGTTCGTCGGCACCACGCGCCTCGAGC TCGTCCCGCCCGGCGGGGAGATGGAGCTTCGGCTCGGGGTGGACGACCGCATCAGGGTGGAGCGCGAGCTGGTCAGCCGG GTCACCGGCCGGCGGGTGGTCGGCAACACCCGGCGGACGGACGTCGTCCACCGCACCACCGTCACCAACCACGCGCCGAT GCGGGCCCGGGTGACCGTGCGGGACCAGGTGCCGGTCTCCCGGCACGAGAACATCCAGGTCAGGGAGGTCGTGGCCGCTC CCGCCGCCACCGAGCACACCGATCTGGGGCTGCTTACCTGGGAGCTGGAGCTCGAGCCGGGCTCGAGCCGGGAGATCACG CTGTCCTACCGGCTCGAGCACCCTCGCGGCGTGGAGATCACCGGCTGGGGCGACTGA
Upstream 100 bases:
>100_bases AACGGGCCCCGCGGCCGCCCGGCCCGAGCGGCACCGGGGCGGCATCGGGATCAGCGGTGTCCCACGGGGATAGCACGGTC GCCGACCATATGGTGTCCGG
Downstream 100 bases:
>100_bases CCCGGCGCCGCCCGCGGGCGGTCACCGGGGGAGAGCGGTGGTGGAGGCGTCGAGCCCGCGCGTCCAGCCGCCCTCCTTGA TCTGGCCGTTGTCGCCGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 578; Mature: 578
Protein sequence:
>578_residues MMSTADGTPDLPDAPAGAPTGAPPSVLLDAPISAVVVYPTAARVTRRGRFDVATLGSPSERVEVTLSGLPLELDEDSVRV SGTGSARVLGVRVVSQARATPDAGALADLRARQAELRAHLAEIGDEDETERARRSFLDVAARVGAGALARGWAHEGTDRE GDGPGDAAARLVTVGDAFAAQMSAVHARRRALAERRKETERELTVLGRVIEARHARPEPDTRAIVVDLEPPTATEGPAEG VLVDRTASLVDLEVSYLVRSASWRSGYDARLDGERVTLTWFAMISQRTGEDWPVTDLRLSTARPSSGVDLPELSPQYVDI ARPRVLPRGRAKASGEGRGGGGDGMTTFMPAAMAAPAQAPPPMAAAEATLESAGPASTYRPPRPVAVPADGDPHRTTVAV IELDAVLDHVTVPKLAAEALLRAAVVNTSSHTLLPGKASVFHGPEFVGTTRLELVPPGGEMELRLGVDDRIRVERELVSR VTGRRVVGNTRRTDVVHRTTVTNHAPMRARVTVRDQVPVSRHENIQVREVVAAPAATEHTDLGLLTWELELEPGSSREIT LSYRLEHPRGVEITGWGD
Sequences:
>Translated_578_residues MMSTADGTPDLPDAPAGAPTGAPPSVLLDAPISAVVVYPTAARVTRRGRFDVATLGSPSERVEVTLSGLPLELDEDSVRV SGTGSARVLGVRVVSQARATPDAGALADLRARQAELRAHLAEIGDEDETERARRSFLDVAARVGAGALARGWAHEGTDRE GDGPGDAAARLVTVGDAFAAQMSAVHARRRALAERRKETERELTVLGRVIEARHARPEPDTRAIVVDLEPPTATEGPAEG VLVDRTASLVDLEVSYLVRSASWRSGYDARLDGERVTLTWFAMISQRTGEDWPVTDLRLSTARPSSGVDLPELSPQYVDI ARPRVLPRGRAKASGEGRGGGGDGMTTFMPAAMAAPAQAPPPMAAAEATLESAGPASTYRPPRPVAVPADGDPHRTTVAV IELDAVLDHVTVPKLAAEALLRAAVVNTSSHTLLPGKASVFHGPEFVGTTRLELVPPGGEMELRLGVDDRIRVERELVSR VTGRRVVGNTRRTDVVHRTTVTNHAPMRARVTVRDQVPVSRHENIQVREVVAAPAATEHTDLGLLTWELELEPGSSREIT LSYRLEHPRGVEITGWGD >Mature_578_residues MMSTADGTPDLPDAPAGAPTGAPPSVLLDAPISAVVVYPTAARVTRRGRFDVATLGSPSERVEVTLSGLPLELDEDSVRV SGTGSARVLGVRVVSQARATPDAGALADLRARQAELRAHLAEIGDEDETERARRSFLDVAARVGAGALARGWAHEGTDRE GDGPGDAAARLVTVGDAFAAQMSAVHARRRALAERRKETERELTVLGRVIEARHARPEPDTRAIVVDLEPPTATEGPAEG VLVDRTASLVDLEVSYLVRSASWRSGYDARLDGERVTLTWFAMISQRTGEDWPVTDLRLSTARPSSGVDLPELSPQYVDI ARPRVLPRGRAKASGEGRGGGGDGMTTFMPAAMAAPAQAPPPMAAAEATLESAGPASTYRPPRPVAVPADGDPHRTTVAV IELDAVLDHVTVPKLAAEALLRAAVVNTSSHTLLPGKASVFHGPEFVGTTRLELVPPGGEMELRLGVDDRIRVERELVSR VTGRRVVGNTRRTDVVHRTTVTNHAPMRARVTVRDQVPVSRHENIQVREVVAAPAATEHTDLGLLTWELELEPGSSREIT LSYRLEHPRGVEITGWGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17566996, Length=540, Percent_Identity=27.037037037037, Blast_Score=145, Evalue=6e-35, Organism=Caenorhabditis elegans, GI71988071, Length=572, Percent_Identity=27.4475524475524, Blast_Score=142, Evalue=7e-34, Organism=Caenorhabditis elegans, GI17566994, Length=583, Percent_Identity=25.7289879931389, Blast_Score=136, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17566992, Length=547, Percent_Identity=25.7769652650823, Blast_Score=132, Evalue=7e-31, Organism=Caenorhabditis elegans, GI115534513, Length=360, Percent_Identity=28.3333333333333, Blast_Score=123, Evalue=3e-28, Organism=Caenorhabditis elegans, GI71988077, Length=310, Percent_Identity=31.2903225806452, Blast_Score=120, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61625; Mature: 61625
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMSTADGTPDLPDAPAGAPTGAPPSVLLDAPISAVVVYPTAARVTRRGRFDVATLGSPSE CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHCCCEEEEECCCCCC RVEVTLSGLPLELDEDSVRVSGTGSARVLGVRVVSQARATPDAGALADLRARQAELRAHL EEEEEEECCCEEECCCCEEEECCCCEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHH AEIGDEDETERARRSFLDVAARVGAGALARGWAHEGTDREGDGPGDAAARLVTVGDAFAA HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHEEEEEECHHHHH QMSAVHARRRALAERRKETERELTVLGRVIEARHARPEPDTRAIVVDLEPPTATEGPAEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC VLVDRTASLVDLEVSYLVRSASWRSGYDARLDGERVTLTWFAMISQRTGEDWPVTDLRLS EEEECCCCEEEEEHHHHHHHCCCCCCCCCEECCCEEEEEEEEEHHHCCCCCCCCCEEEEE TARPSSGVDLPELSPQYVDIARPRVLPRGRAKASGEGRGGGGDGMTTFMPAAMAAPAQAP CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC PPMAAAEATLESAGPASTYRPPRPVAVPADGDPHRTTVAVIELDAVLDHVTVPKLAAEAL CCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEHHHHHHCCHHHHHHHHH LRAAVVNTSSHTLLPGKASVFHGPEFVGTTRLELVPPGGEMELRLGVDDRIRVERELVSR HHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHH VTGRRVVGNTRRTDVVHRTTVTNHAPMRARVTVRDQVPVSRHENIQVREVVAAPAATEHT HCCCEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC DLGLLTWELELEPGSSREITLSYRLEHPRGVEITGWGD CCEEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCC >Mature Secondary Structure MMSTADGTPDLPDAPAGAPTGAPPSVLLDAPISAVVVYPTAARVTRRGRFDVATLGSPSE CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCHHHHHHCCCEEEEECCCCCC RVEVTLSGLPLELDEDSVRVSGTGSARVLGVRVVSQARATPDAGALADLRARQAELRAHL EEEEEEECCCEEECCCCEEEECCCCEEEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHH AEIGDEDETERARRSFLDVAARVGAGALARGWAHEGTDREGDGPGDAAARLVTVGDAFAA HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHEEEEEECHHHHH QMSAVHARRRALAERRKETERELTVLGRVIEARHARPEPDTRAIVVDLEPPTATEGPAEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCC VLVDRTASLVDLEVSYLVRSASWRSGYDARLDGERVTLTWFAMISQRTGEDWPVTDLRLS EEEECCCCEEEEEHHHHHHHCCCCCCCCCEECCCEEEEEEEEEHHHCCCCCCCCCEEEEE TARPSSGVDLPELSPQYVDIARPRVLPRGRAKASGEGRGGGGDGMTTFMPAAMAAPAQAP CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC PPMAAAEATLESAGPASTYRPPRPVAVPADGDPHRTTVAVIELDAVLDHVTVPKLAAEAL CCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEHHHHHHCCHHHHHHHHH LRAAVVNTSSHTLLPGKASVFHGPEFVGTTRLELVPPGGEMELRLGVDDRIRVERELVSR HHHHHCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHH VTGRRVVGNTRRTDVVHRTTVTNHAPMRARVTVRDQVPVSRHENIQVREVVAAPAATEHT HCCCEEECCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC DLGLLTWELELEPGSSREITLSYRLEHPRGVEITGWGD CCEEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA