| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318258
Identifier: 158318258
GI number: 158318258
Start: 7931003
End: 7932271
Strand: Reverse
Name: 158318258
Synonym: Franean1_6523
Alternate gene names: NA
Gene position: 7932271-7931003 (Counterclockwise)
Preceding gene: 158318259
Following gene: 158318257
Centisome position: 88.31
GC content: 73.6
Gene sequence:
>1269_bases ATGCCTGATCCGACATCTGCACGTGACCTGTCGTTGACCTGTCGTCCCTGCCGAGGAGATGTGTCCGGAAGCGAGAGCCT TGCCGTGCGGCCGCCGGTGGCCGGCACGGAGAGCGTCGAAGGTGCGAGCTGGACGGTCCTGCTGGTCGAGGACGACGACA CCGACGCGTTCCTGGTGTCCGAGCTCCTCGACGAGGTGGCCGCCCCGCTCAGGCTCACCCGGGTGCGCACGGTCGCCGAG GCGATCGTCCACACCCAGAAGGTCGCGTGCGTCCTGCTGGACCTGGGACTGCCGGACAGCGAGGGCCTGTCGGCCCTGCG CCGGCTGCTCACCGTCGAGCGGGGCGCGCCGGTCGTCGTCCTCACCGGCCTGGTGGACGAGTACCGCGGAGCCGAGGCCG TCGCCGCGGGCGCGCAGGACTATCTGGTCAAGGGCCAGGTGGACGGGCGCGATCTGCTGCGCGCGGTGCGGTACGCCATC GAGCGGGAGCGGGCGGACACCGCGGCGCTCGCGCTGCGCGAGTCGGAGCTGCAGGCCGAGGAGAAGGCGCGCCTGGAGCG GGGCCTGCTCCCCAGGCCGCTGGTGGACGACCCGACGCTGGACCACCGGGCCCGGTACCGCCCGGGCCACCGGCAGGCCC TGCTCGGCGGCGACTTCTACGACATGGTGTCGACGTCGGACGGCACGGTGCACGTGCTGCTCGGCGACGTCTGCGGCCAC GGGCCGGACGAGGCCGCGCTCGGGGTGAGCCTGCGGATCGCCTGGCGCACCCTCGTCCTGGCCGGCGTTCCGGACGCCGA CCGCCTGGGCTTCCTGCAACAGGTCCTGGTCAGCGAGCGGGAACGGGACGAGATCTTCGCGACGGTCTGCGCGCTGGCGA TCGCGCCGGACCGGCGCAGCCTGCGGATGACCCTCGCGGGTCATCCGCCGCCCGCGCTGCTGTTCCCGCGGATCGCCGCG CTGCGCGGTGACGTGGTCGTGCCGGCACTGGGCATCCTCGACGAGGTGGTGAGTGACGAGGTGACCATCGAGCTCGGTGA GCGCTGGGCACTGCTGCTCGCGACGGACGGCCTGCTGGAGGGCCGCGACAGCGTGGGCGGGGAGCCGCTGGGCTGGGCGG GCGTGCTGCCCGAGGTGGCCCGGCTGTGGCCCGAGCGCGGGCCGGACGGCCTGCTCGACGACCTGATCGACCGCGTGGAG GAACGTAACGGCGGCCCGCTGACCGACGACGTGGCGCTGCTGCTGCTCATCCGTGGGCAGGTCCCGTGA
Upstream 100 bases:
>100_bases CGAGCGCGCTCGCGTTGTGTGATTCGGCGTTCCATCGTTCGCACGGGCCTTTCGTCATGCCATGCTGCGAAGTCCGGGCG CGGCCCGACATGGGTCGGTT
Downstream 100 bases:
>100_bases GCGACCAGGCCGCACCGGCGGTGCTGCGCAGGATGCGCGGCTGGCGGCTGCGCCGGCGGCTCGCCGCGGTGTACATCGCG TTGTCCATGGTGCTGCTGCT
Product: response regulator receiver modulated serine phosphatase
Products: NA
Alternate protein names: Response Regulator Receiver Modulated Serine Phosphatase; PAS/PAC Sensor Protein; Response Regulator Receiver Protein; Regulatory Protein; PAS/PAC Sensor Hybrid Histidine Kinase; Response Regulator; Stage II Sporulation Protein E; Two-Component Hybrid Sensor And Regulator; Integral Membrane Sensor Protein; Sensory Transduction Histidine Kinase; Serine Phosphatase RsbU Regulator Of Sigma Subunit; Multi-Sensor Signal Transduction Histidine Kinase; Protein Serine/Threonine Phosphatase; Stage II Sporulation E Family Protein; Multi-Sensor Hybrid Histidine Kinase; Response Regulator Receiver Modulated Diguanylate Cyclase; ATPase Histidine Kinase- DNA Gyrase B- And; Hybrid Sensor Histidine Kinase; Response Regulator Receiver Domain Protein; Signal-Transducing Histidine Kinase; Response Regulator Receiver Modulated GAF Sensor Protein; Response Regulatory Protein; PAS Sensor Signal Transduction Histidine Kinase; Two Component System Response Regulator; Two-Component Response Regulator; PAS Sensor Protein; Two-Component Hybrid Histidine Kinase Sensor And Regulator; Phosphoserine Phosphatase RsbP; Two-Component System Response Regulator Receiver; GGDEF Domain Protein; Sensor Protein; Phytochrome Sensor Protein; Phosphoserine Phosphatase; Signal-Transducing Histidine Kinase-Like; Two-Component Hybrid Histidine Kinase; Hybrid Sensory Kinase; Glutamate Dehydrogenase; Chemotaxis Response Regulator; PAS Sensor Diguanylate Cyclase; Response Regulator ReceiverC-Like; Two-Component Regulator; Sensory Box/Response Regulator; Guanylate Cyclase; Integral Membrane Protein; GAF Domain-Containing Serine/Threonine Phosphatase; Serine/Threonine Phosphatase; C-Like Protein; Signal Transduction Histidine Kinase; Multi-Sensor Histidine Kinase; Regulatory Phosphatase; Regulatory Protein Phosphatase; Histidine Kinase/Response Regulator Hybrid Protein; Sensor Kinase Protein
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MPDPTSARDLSLTCRPCRGDVSGSESLAVRPPVAGTESVEGASWTVLLVEDDDTDAFLVSELLDEVAAPLRLTRVRTVAE AIVHTQKVACVLLDLGLPDSEGLSALRRLLTVERGAPVVVLTGLVDEYRGAEAVAAGAQDYLVKGQVDGRDLLRAVRYAI ERERADTAALALRESELQAEEKARLERGLLPRPLVDDPTLDHRARYRPGHRQALLGGDFYDMVSTSDGTVHVLLGDVCGH GPDEAALGVSLRIAWRTLVLAGVPDADRLGFLQQVLVSERERDEIFATVCALAIAPDRRSLRMTLAGHPPPALLFPRIAA LRGDVVVPALGILDEVVSDEVTIELGERWALLLATDGLLEGRDSVGGEPLGWAGVLPEVARLWPERGPDGLLDDLIDRVE ERNGGPLTDDVALLLLIRGQVP
Sequences:
>Translated_422_residues MPDPTSARDLSLTCRPCRGDVSGSESLAVRPPVAGTESVEGASWTVLLVEDDDTDAFLVSELLDEVAAPLRLTRVRTVAE AIVHTQKVACVLLDLGLPDSEGLSALRRLLTVERGAPVVVLTGLVDEYRGAEAVAAGAQDYLVKGQVDGRDLLRAVRYAI ERERADTAALALRESELQAEEKARLERGLLPRPLVDDPTLDHRARYRPGHRQALLGGDFYDMVSTSDGTVHVLLGDVCGH GPDEAALGVSLRIAWRTLVLAGVPDADRLGFLQQVLVSERERDEIFATVCALAIAPDRRSLRMTLAGHPPPALLFPRIAA LRGDVVVPALGILDEVVSDEVTIELGERWALLLATDGLLEGRDSVGGEPLGWAGVLPEVARLWPERGPDGLLDDLIDRVE ERNGGPLTDDVALLLLIRGQVP >Mature_421_residues PDPTSARDLSLTCRPCRGDVSGSESLAVRPPVAGTESVEGASWTVLLVEDDDTDAFLVSELLDEVAAPLRLTRVRTVAEA IVHTQKVACVLLDLGLPDSEGLSALRRLLTVERGAPVVVLTGLVDEYRGAEAVAAGAQDYLVKGQVDGRDLLRAVRYAIE RERADTAALALRESELQAEEKARLERGLLPRPLVDDPTLDHRARYRPGHRQALLGGDFYDMVSTSDGTVHVLLGDVCGHG PDEAALGVSLRIAWRTLVLAGVPDADRLGFLQQVLVSERERDEIFATVCALAIAPDRRSLRMTLAGHPPPALLFPRIAAL RGDVVVPALGILDEVVSDEVTIELGERWALLLATDGLLEGRDSVGGEPLGWAGVLPEVARLWPERGPDGLLDDLIDRVEE RNGGPLTDDVALLLLIRGQVP
Specific function: Unknown
COG id: COG0784
COG function: function code T; FOG: CheY-like receiver
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45392; Mature: 45261
Theoretical pI: Translated: 4.40; Mature: 4.40
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDPTSARDLSLTCRPCRGDVSGSESLAVRPPVAGTESVEGASWTVLLVEDDDTDAFLVS CCCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHH ELLDEVAAPLRLTRVRTVAEAIVHTQKVACVLLDLGLPDSEGLSALRRLLTVERGAPVVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE LTGLVDEYRGAEAVAAGAQDYLVKGQVDGRDLLRAVRYAIERERADTAALALRESELQAE EECHHHHHCCCHHHHCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKARLERGLLPRPLVDDPTLDHRARYRPGHRQALLGGDFYDMVSTSDGTVHVLLGDVCGH HHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCEEEECCCHHHHHCCCCCEEEEEEEHHCCC GPDEAALGVSLRIAWRTLVLAGVPDADRLGFLQQVLVSERERDEIFATVCALAIAPDRRS CCCCHHHCEEEEEEEHHHHEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC LRMTLAGHPPPALLFPRIAALRGDVVVPALGILDEVVSDEVTIELGERWALLLATDGLLE EEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCC GRDSVGGEPLGWAGVLPEVARLWPERGPDGLLDDLIDRVEERNGGPLTDDVALLLLIRGQ CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC VP CC >Mature Secondary Structure PDPTSARDLSLTCRPCRGDVSGSESLAVRPPVAGTESVEGASWTVLLVEDDDTDAFLVS CCCCCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCHHHHH ELLDEVAAPLRLTRVRTVAEAIVHTQKVACVLLDLGLPDSEGLSALRRLLTVERGAPVVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEE LTGLVDEYRGAEAVAAGAQDYLVKGQVDGRDLLRAVRYAIERERADTAALALRESELQAE EECHHHHHCCCHHHHCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKARLERGLLPRPLVDDPTLDHRARYRPGHRQALLGGDFYDMVSTSDGTVHVLLGDVCGH HHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCEEEECCCHHHHHCCCCCEEEEEEEHHCCC GPDEAALGVSLRIAWRTLVLAGVPDADRLGFLQQVLVSERERDEIFATVCALAIAPDRRS CCCCHHHCEEEEEEEHHHHEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC LRMTLAGHPPPALLFPRIAALRGDVVVPALGILDEVVSDEVTIELGERWALLLATDGLLE EEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCC GRDSVGGEPLGWAGVLPEVARLWPERGPDGLLDDLIDRVEERNGGPLTDDVALLLLIRGQ CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC VP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA