| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ybbO [C]
Identifier: 158318207
GI number: 158318207
Start: 7867439
End: 7868203
Strand: Reverse
Name: ybbO [C]
Synonym: Franean1_6472
Alternate gene names: 158318207
Gene position: 7868203-7867439 (Counterclockwise)
Preceding gene: 158318208
Following gene: 158318206
Centisome position: 87.6
GC content: 70.59
Gene sequence:
>765_bases ATGGTGCGGTTGCCGCTCAACGGAGTTTTCTCGCCCCCGGGCCGCCTGACGGGCCGGGCGGCCGTGGTGACCGGTGCCTC CAGCGGCATCGGTCACGCGATCGCGCTCGACCTCGCCGCCGCCGGGGCATCCGTCCTGGCCACGGGGCGGGACGGCGCGG CATTGTCCCAACTCGCGCGCACGGCCGCCGCCGGCCGGGTCGACCTGCGCGTCTTCGCCACCGAGATCACCGACGCCGAC GGCCGGGAGCGGCTCGTCGAGACGGCCCGGGCGGAGCTAGGGGAGATCTCTGTGCTGGTCCACTCGGCCGGGGTCTACCA CAGTGGTCCGATGACGATGGCGAGTCTCGCCGACCTTGACGATCAGTATGCGGTCAACCTGCGGGCCCCGTATGCGCTGA CCCAGCTGCTGCTACCCGATCTCACTCGCACGCTGGGCGACATCATCTTCGTCAACTCCACCCAGGGCCTGTCGGCGAGC CCGGAGGTCGGCCAGTACGCCGCGACGAAGCACGCGCTGCGCGCGATCGCGGACAGCCTGCGCGGCGAGCTGGGGCCGAA GGGACCGCGGGTCTGCACCATCCTGCCTGGTCGGACGGCCACCGCGATGCAACGGAAGATTTTCGAGACGGAGGGTCGGG ACTGGGATCCCGAGGCCCTAATGCAGCCCGAGGACGTCGCGGCGATGGTGCTCTCGGTCGTGGAGCTGCCGCGTCGCGTC GAGGTGACCGACATCGTGATGCGACCGGCGCAAAAGGTCTCCTGA
Upstream 100 bases:
>100_bases CGTCGCGCGGCACGGCGGGCCTGTTGGACCGGTGCCGCGAGTTTCGTCGTAGGGTGAGGCTGGCTGAACCTTCCACTAAC GTAAGGGTTGTTCGTCTCCC
Downstream 100 bases:
>100_bases TCCGGCGAGAGCATATTGTTCTCCGGGTTCGGTGCGAATTACGCGAGAATTCCACGAGGATTTCCGCGGCGGTGCCGCCT CAACGGCTGGTTGGCCGTGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MVRLPLNGVFSPPGRLTGRAAVVTGASSGIGHAIALDLAAAGASVLATGRDGAALSQLARTAAAGRVDLRVFATEITDAD GRERLVETARAELGEISVLVHSAGVYHSGPMTMASLADLDDQYAVNLRAPYALTQLLLPDLTRTLGDIIFVNSTQGLSAS PEVGQYAATKHALRAIADSLRGELGPKGPRVCTILPGRTATAMQRKIFETEGRDWDPEALMQPEDVAAMVLSVVELPRRV EVTDIVMRPAQKVS
Sequences:
>Translated_254_residues MVRLPLNGVFSPPGRLTGRAAVVTGASSGIGHAIALDLAAAGASVLATGRDGAALSQLARTAAAGRVDLRVFATEITDAD GRERLVETARAELGEISVLVHSAGVYHSGPMTMASLADLDDQYAVNLRAPYALTQLLLPDLTRTLGDIIFVNSTQGLSAS PEVGQYAATKHALRAIADSLRGELGPKGPRVCTILPGRTATAMQRKIFETEGRDWDPEALMQPEDVAAMVLSVVELPRRV EVTDIVMRPAQKVS >Mature_254_residues MVRLPLNGVFSPPGRLTGRAAVVTGASSGIGHAIALDLAAAGASVLATGRDGAALSQLARTAAAGRVDLRVFATEITDAD GRERLVETARAELGEISVLVHSAGVYHSGPMTMASLADLDDQYAVNLRAPYALTQLLLPDLTRTLGDIIFVNSTQGLSAS PEVGQYAATKHALRAIADSLRGELGPKGPRVCTILPGRTATAMQRKIFETEGRDWDPEALMQPEDVAAMVLSVVELPRRV EVTDIVMRPAQKVS
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=223, Percent_Identity=30.4932735426009, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=32.5242718446602, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=31.1203319502075, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=31.7708333333333, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI33667109, Length=211, Percent_Identity=32.2274881516588, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI109715829, Length=262, Percent_Identity=28.2442748091603, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI7705855, Length=194, Percent_Identity=29.8969072164948, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI226371731, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=31.8681318681319, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI15277342, Length=232, Percent_Identity=31.4655172413793, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI22507405, Length=216, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI4503817, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI142976729, Length=223, Percent_Identity=24.2152466367713, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI32455239, Length=217, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI5031765, Length=217, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7657478, Length=216, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI44680136, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI44680133, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI17738292, Length=206, Percent_Identity=28.6407766990291, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI4504505, Length=238, Percent_Identity=28.1512605042017, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1786701, Length=199, Percent_Identity=31.6582914572864, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787335, Length=197, Percent_Identity=31.9796954314721, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=29.3650793650794, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082100, Length=210, Percent_Identity=29.5238095238095, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787526, Length=228, Percent_Identity=31.140350877193, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787905, Length=234, Percent_Identity=29.4871794871795, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI87082160, Length=192, Percent_Identity=28.6458333333333, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787820, Length=240, Percent_Identity=28.75, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789378, Length=201, Percent_Identity=30.3482587064677, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789208, Length=200, Percent_Identity=27.5, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=211, Percent_Identity=26.0663507109005, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71994604, Length=197, Percent_Identity=35.0253807106599, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560676, Length=210, Percent_Identity=29.0476190476191, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17559104, Length=237, Percent_Identity=28.6919831223629, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=30.1587301587302, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=29.4416243654822, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI72000259, Length=246, Percent_Identity=29.2682926829268, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17544670, Length=203, Percent_Identity=31.0344827586207, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17563726, Length=247, Percent_Identity=27.9352226720648, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17570069, Length=243, Percent_Identity=27.5720164609054, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17538480, Length=199, Percent_Identity=31.6582914572864, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562910, Length=241, Percent_Identity=25.7261410788382, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17531453, Length=211, Percent_Identity=33.175355450237, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565030, Length=215, Percent_Identity=29.7674418604651, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17560220, Length=239, Percent_Identity=29.2887029288703, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI193204405, Length=237, Percent_Identity=27.8481012658228, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17561402, Length=207, Percent_Identity=28.9855072463768, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560150, Length=207, Percent_Identity=28.5024154589372, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71997402, Length=247, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17560332, Length=238, Percent_Identity=27.3109243697479, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=27.9187817258883, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562990, Length=197, Percent_Identity=29.9492385786802, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551412, Length=200, Percent_Identity=28.5, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=29.4416243654822, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25147288, Length=191, Percent_Identity=32.4607329842932, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17555706, Length=193, Percent_Identity=30.0518134715026, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17568967, Length=194, Percent_Identity=26.2886597938144, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=22.4489795918367, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=251, Percent_Identity=27.4900398406374, Blast_Score=77, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6322227, Length=215, Percent_Identity=31.1627906976744, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=206, Percent_Identity=29.6116504854369, Blast_Score=65, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6319635, Length=211, Percent_Identity=26.0663507109005, Blast_Score=63, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=35.2631578947368, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=35.2631578947368, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24644339, Length=191, Percent_Identity=31.413612565445, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI23397609, Length=192, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI28571387, Length=245, Percent_Identity=31.4285714285714, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=27.5303643724696, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=31.9796954314721, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI21355319, Length=203, Percent_Identity=29.064039408867, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=28.1407035175879, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24641232, Length=247, Percent_Identity=28.3400809716599, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24648693, Length=252, Percent_Identity=28.968253968254, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI21355889, Length=252, Percent_Identity=28.968253968254, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24643142, Length=235, Percent_Identity=31.9148936170213, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI21356301, Length=236, Percent_Identity=28.3898305084746, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24640492, Length=209, Percent_Identity=26.7942583732057, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24639444, Length=225, Percent_Identity=29.3333333333333, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24651139, Length=186, Percent_Identity=31.1827956989247, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007238, Length=180, Percent_Identity=28.3333333333333, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24649181, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=26.4227642276423, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI116007234, Length=249, Percent_Identity=28.9156626506024, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=28.2051282051282, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24663911, Length=260, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281364494, Length=251, Percent_Identity=27.0916334661355, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355631, Length=180, Percent_Identity=29.4444444444444, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26716; Mature: 26716
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00626 RCC1_2 ; PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRLPLNGVFSPPGRLTGRAAVVTGASSGIGHAIALDLAAAGASVLATGRDGAALSQLAR CEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHH TAAAGRVDLRVFATEITDADGRERLVETARAELGEISVLVHSAGVYHSGPMTMASLADLD HHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCEECCCCHHHHHHCCC DQYAVNLRAPYALTQLLLPDLTRTLGDIIFVNSTQGLSASPEVGQYAATKHALRAIADSL CCEEEEEECHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH RGELGPKGPRVCTILPGRTATAMQRKIFETEGRDWDPEALMQPEDVAAMVLSVVELPRRV HHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCC EVTDIVMRPAQKVS CHHHHHHCCHHHCC >Mature Secondary Structure MVRLPLNGVFSPPGRLTGRAAVVTGASSGIGHAIALDLAAAGASVLATGRDGAALSQLAR CEECCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHH TAAAGRVDLRVFATEITDADGRERLVETARAELGEISVLVHSAGVYHSGPMTMASLADLD HHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHEEEEEECCCCEECCCCHHHHHHCCC DQYAVNLRAPYALTQLLLPDLTRTLGDIIFVNSTQGLSASPEVGQYAATKHALRAIADSL CCEEEEEECHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH RGELGPKGPRVCTILPGRTATAMQRKIFETEGRDWDPEALMQPEDVAAMVLSVVELPRRV HHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCC EVTDIVMRPAQKVS CHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]