BacMap

Definition	Frankia sp. EAN1pec chromosome, complete genome.
Accession	NC_009921
Length	8,982,042

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The map label for this gene is ygfF [H]

Identifier: 158318176

GI number: 158318176

Start: 7832589

End: 7833386

Strand: Direct

Name: ygfF [H]

Synonym: Franean1_6441

Alternate gene names: 158318176

Gene position: 7832589-7833386 (Clockwise)

Preceding gene: 158318175

Following gene: 158318178

Centisome position: 87.2

GC content: 75.81

Gene sequence:

>798_bases
ATGACCGCGATGACTCAGCCGGAGCAGTCGGACGCGGGCAGGGGGGTCGCCGTCGTGACCGGGGGCAGCCGGGGCATCGG
CGCCGCCTGCGCCCGCCTGCTGGCGCGGGCCGGGTGGACGGTCTGCGTCACCTACCGTTCGGACGAGGCCGCCGCGCAGG
AGGTTGTCCGGGAGTGCGAGGCCGCCGCGCGGGCCCGCGGCACGCCGGCCGGGGCCGCCGCCGTCGCCGCGGACCTGGCC
GATCCGGAACAGATCCCCGGGGTCTTCACCGCGGCCGACCGCCTCGGCCCGCTCACCGTCCTGGTGAACAACGCCGGGAT
CGTCGACCGCCAGATGCGGGTGGACGAGATGACCGCCGGCCGGCTGACCCGGATGTTCACCGTCAACACGGTCTCGTCGA
TCCTGTGCGCCGGGGAGGCCGTCCGCCGGATGTCGACCCGGCACGGCGGCACCGGCGGGTCGATCGTCAACATGTCGTCG
GCGGCGGCCAGGCTCGGCAGCCCGGGGCTGTACGTCGACTACGCGGCGAGCAAGGGCGCGATCGACACGCTGACCCTCGG
CCTGGCCAGGGAGGTCGCGGGCGAGGGCGTGCGGGTCAACGCGGTGCGCCCGGGGATCATCGCCACCGACATCCACACCA
GCAGCGGGGACCCGGGGCGGCCCGCCCGGATGGCGGGCAGCATCCCGATCGGCCGCGTGGGCACCGCCGACGAGGTCGCC
CAGGCCGTGGCCTGGCTGTGCTCGTCGGCCGCGTCCTACACGACCGGCGCGATCCTGGACGTCGCCGGCGGCCGTTGA

Upstream 100 bases:

>100_bases
CGCCTGAGCGGCGGGCACGAGCCCCGCCCCGATGGAAAATGGGCCCCGGAACGCAGGCCGGGGCCGCCGGGGAGATCCCC
GGCTGATCGGGAGGGTCGTG

Downstream 100 bases:

>100_bases
ACGAAGGCTGAACGGGCGCGGCTACCGGGCCGACGGGGGCCGGAACATGACCAGGGCGGTGGGGTTCCGGCGGGCGTAGC
GCAGGGCCGCCCGCTCGCAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MTAMTQPEQSDAGRGVAVVTGGSRGIGAACARLLARAGWTVCVTYRSDEAAAQEVVRECEAAARARGTPAGAAAVAADLA
DPEQIPGVFTAADRLGPLTVLVNNAGIVDRQMRVDEMTAGRLTRMFTVNTVSSILCAGEAVRRMSTRHGGTGGSIVNMSS
AAARLGSPGLYVDYAASKGAIDTLTLGLAREVAGEGVRVNAVRPGIIATDIHTSSGDPGRPARMAGSIPIGRVGTADEVA
QAVAWLCSSAASYTTGAILDVAGGR

Sequences:

>Translated_265_residues
MTAMTQPEQSDAGRGVAVVTGGSRGIGAACARLLARAGWTVCVTYRSDEAAAQEVVRECEAAARARGTPAGAAAVAADLA
DPEQIPGVFTAADRLGPLTVLVNNAGIVDRQMRVDEMTAGRLTRMFTVNTVSSILCAGEAVRRMSTRHGGTGGSIVNMSS
AAARLGSPGLYVDYAASKGAIDTLTLGLAREVAGEGVRVNAVRPGIIATDIHTSSGDPGRPARMAGSIPIGRVGTADEVA
QAVAWLCSSAASYTTGAILDVAGGR
>Mature_264_residues
TAMTQPEQSDAGRGVAVVTGGSRGIGAACARLLARAGWTVCVTYRSDEAAAQEVVRECEAAARARGTPAGAAAVAADLAD
PEQIPGVFTAADRLGPLTVLVNNAGIVDRQMRVDEMTAGRLTRMFTVNTVSSILCAGEAVRRMSTRHGGTGGSIVNMSSA
AARLGSPGLYVDYAASKGAIDTLTLGLAREVAGEGVRVNAVRPGIIATDIHTSSGDPGRPARMAGSIPIGRVGTADEVAQ
AVAWLCSSAASYTTGAILDVAGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=35.8565737051793, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=33.852140077821, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI7705925, Length=254, Percent_Identity=33.0708661417323, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=33.0677290836653, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=34.1584158415842, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=30.7392996108949, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=29.6, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI224922801, Length=167, Percent_Identity=33.5329341317365, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4503301, Length=197, Percent_Identity=27.4111675126904, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI59889578, Length=177, Percent_Identity=31.638418079096, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=53.3596837944664, Blast_Score=256, Evalue=7e-70,
Organism=Escherichia coli, GI1788459, Length=250, Percent_Identity=36.4, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=36.1111111111111, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=32.1428571428571, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=34.136546184739, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=29.4117647058824, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=28.90625, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=30.1587301587302, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=31.3253012048193, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082100, Length=268, Percent_Identity=30.9701492537313, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789057, Length=264, Percent_Identity=28.7878787878788, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=34.3629343629344, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=32.8125, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=35.2941176470588, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=257, Percent_Identity=35.7976653696498, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=33.7301587301587, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=33.206106870229, Blast_Score=94, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=32.5842696629214, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=30.0395256916996, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=30.3501945525292, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=31.0606060606061, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=31.4606741573034, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=31.7460317460317, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=32.5842696629214, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=262, Percent_Identity=32.0610687022901, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.203007518797, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=265, Percent_Identity=31.3207547169811, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=32.5842696629214, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=30.0380228136882, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=29.7397769516729, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=30.4832713754647, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=30.0751879699248, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.9242424242424, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=29.0566037735849, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=32.5757575757576, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=257, Percent_Identity=26.0700389105058, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=211, Percent_Identity=30.8056872037915, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=37.3540856031128, Blast_Score=117, Evalue=8e-27,
Organism=Drosophila melanogaster, GI28571526, Length=259, Percent_Identity=37.8378378378378, Blast_Score=114, Evalue=5e-26,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=33.8461538461538, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=32.8185328185328, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=31.6205533596838, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=33.0708661417323, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=30.46875, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24644337, Length=199, Percent_Identity=34.1708542713568, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=31.3807531380753, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648693, Length=241, Percent_Identity=32.3651452282158, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355889, Length=241, Percent_Identity=32.3651452282158, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI161076933, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584748, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=29.2181069958848, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26812; Mature: 26680

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMTQPEQSDAGRGVAVVTGGSRGIGAACARLLARAGWTVCVTYRSDEAAAQEVVRECE
CCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
AAARARGTPAGAAAVAADLADPEQIPGVFTAADRLGPLTVLVNNAGIVDRQMRVDEMTAG
HHHHHCCCCCCHHHHHHHCCCHHHCCCCEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
RLTRMFTVNTVSSILCAGEAVRRMSTRHGGTGGSIVNMSSAAARLGSPGLYVDYAASKGA
HHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHCCCCEEEEECCCCCC
IDTLTLGLAREVAGEGVRVNAVRPGIIATDIHTSSGDPGRPARMAGSIPIGRVGTADEVA
HHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHCCCCCCCCCCCHHHHH
QAVAWLCSSAASYTTGAILDVAGGR
HHHHHHHHHHCCCCCCEEEECCCCC
>Mature Secondary Structure 
TAMTQPEQSDAGRGVAVVTGGSRGIGAACARLLARAGWTVCVTYRSDEAAAQEVVRECE
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH
AAARARGTPAGAAAVAADLADPEQIPGVFTAADRLGPLTVLVNNAGIVDRQMRVDEMTAG
HHHHHCCCCCCHHHHHHHCCCHHHCCCCEEHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
RLTRMFTVNTVSSILCAGEAVRRMSTRHGGTGGSIVNMSSAAARLGSPGLYVDYAASKGA
HHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHCCCCEEEEECCCCCC
IDTLTLGLAREVAGEGVRVNAVRPGIIATDIHTSSGDPGRPARMAGSIPIGRVGTADEVA
HHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCCCCCCCHHCCCCCCCCCCCHHHHH
QAVAWLCSSAASYTTGAILDVAGGR
HHHHHHHHHHCCCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]