| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318174
Identifier: 158318174
GI number: 158318174
Start: 7829184
End: 7830443
Strand: Reverse
Name: 158318174
Synonym: Franean1_6439
Alternate gene names: NA
Gene position: 7830443-7829184 (Counterclockwise)
Preceding gene: 158318177
Following gene: 158318173
Centisome position: 87.18
GC content: 75.71
Gene sequence:
>1260_bases ATGGTCGGGGCTCCTTCGGCCGCGCTGCCACGGCAGCGACCCGCGGCCGTACCGGTGGCGTTGCCTGGGCTGATTCCCTT CACGCCACCACCAGCCGCCGCGTCCGCGCGCCGCGCCGGCGCGGCGCACGCCGGCGCGCCGCCCGGCCTGGGTGACGCGC CGCCCGCCGGGGCGGGGGCCGTGGCCTGGCTCGCCCGCGTCGGGTCGTGGCCCTCGCACGCCTTCGAGCGGGTGCGCCCG CGGTGGGCGGGAGCGCGGCTCGGCCTGCTCGCCTACACGGTGGGCCAGGTCATCCTGCTCGGGCTGCTCTACGTCGGCTA CAGCCTGAGCCGGCACCTGGCTACCGGCCGCGAGCCCGACGCACTCGGGCACGCTGTTGACGTCTGGCGGCTGGAGCGGT TCCTGCGCCTGCCCGACGAGGCCTCGCTGCAGGGCGTCGCGCTGGCGCACCAGTGGCTGCCGCACGGGGCGAACTGGTAC TACGTCGGCGTCCACTTCCCGGCGGCTATCCTGCTGCTGGTGTGGGTGTTCGCCCGGCACCGCGACCACTGGCGCCGAGT CCGCAACGTGATCATCCTGGCGACGGGCGCCGGCCTGGGGATCCACCTGCTCTACCCGCTCGCGCCGCCGCGTTTCCTCC CACGGGTCGACTCGTCGGTCGGCCTGGTCGACACCGGCATGCTCTTCGGGCCGTCACCGTACGGGAAGGGCAGCGGCGGG GTCGCCAACCAGTACGCCGCGATGCCCAGTCTGCACGTGGGGTGGGCGATCCTCGAGGCGTGGGCGGTGGTCACCATCCT GCGCCACCGGATGCGCTGGCTCGCGGTGATCCAGCCGCTGGCGACCGTCGCCGTGGTCGTGCTGACCGCCAACCACTTCT GGCTGGACGGCATCGTGGGCGGCACCCTGGTCGCGGGCGCGGTGCTGCTCGTCGGCCGCCGTCGCCCGGTGCCGGAGCAG CCCGCCCTGGTGAGCCTCGGGTTCCGGCCGGCCGTGGCCCCGCGGCCGGCCGCATCCGCGGGGTCCGCGGAGGTCTCGGC TGTGTCCCCGGGTGTCTCGGCGGTGCCTCCGGCGGTCGTGCCCTTGGCGGTCGTGCCCGCGGAGCCGGCAGTGCCCACGC AGTCATCAGCGCCCGTGGAGCCGGCGGTACCTGCGGAGCCGGCAGTGCCGCCCCAGCACGGGCTCGAGAGCCCCGGAACC GGGAATGCCCCGGGGGACAGGCCGACTGCGCACGCCGATCCCGTGTCGGCCGTTACGTAG
Upstream 100 bases:
>100_bases GCCGAGTGTTGGTCTACGGGGGCGGCTGCCAGGTGTCACGTCCGGTGCGGTGGGCCCGTCCTTGTGGCGGGTCCGGAACG CGTCGACGAGGAGGGGAAAC
Downstream 100 bases:
>100_bases CGTGATACGGCCGTGGGAGTCCCGCGGCCACCCGCATCTTCGGAGGCAGTGTGGAGACCGTCGACGTCGTGATCGTCGGG GTGGGGCTGGCCGGGCTCTC
Product: putative RNA-binding protein
Products: NA
Alternate protein names: Phosphoesterase PA-Phosphatase
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MVGAPSAALPRQRPAAVPVALPGLIPFTPPPAAASARRAGAAHAGAPPGLGDAPPAGAGAVAWLARVGSWPSHAFERVRP RWAGARLGLLAYTVGQVILLGLLYVGYSLSRHLATGREPDALGHAVDVWRLERFLRLPDEASLQGVALAHQWLPHGANWY YVGVHFPAAILLLVWVFARHRDHWRRVRNVIILATGAGLGIHLLYPLAPPRFLPRVDSSVGLVDTGMLFGPSPYGKGSGG VANQYAAMPSLHVGWAILEAWAVVTILRHRMRWLAVIQPLATVAVVVLTANHFWLDGIVGGTLVAGAVLLVGRRRPVPEQ PALVSLGFRPAVAPRPAASAGSAEVSAVSPGVSAVPPAVVPLAVVPAEPAVPTQSSAPVEPAVPAEPAVPPQHGLESPGT GNAPGDRPTAHADPVSAVT
Sequences:
>Translated_419_residues MVGAPSAALPRQRPAAVPVALPGLIPFTPPPAAASARRAGAAHAGAPPGLGDAPPAGAGAVAWLARVGSWPSHAFERVRP RWAGARLGLLAYTVGQVILLGLLYVGYSLSRHLATGREPDALGHAVDVWRLERFLRLPDEASLQGVALAHQWLPHGANWY YVGVHFPAAILLLVWVFARHRDHWRRVRNVIILATGAGLGIHLLYPLAPPRFLPRVDSSVGLVDTGMLFGPSPYGKGSGG VANQYAAMPSLHVGWAILEAWAVVTILRHRMRWLAVIQPLATVAVVVLTANHFWLDGIVGGTLVAGAVLLVGRRRPVPEQ PALVSLGFRPAVAPRPAASAGSAEVSAVSPGVSAVPPAVVPLAVVPAEPAVPTQSSAPVEPAVPAEPAVPPQHGLESPGT GNAPGDRPTAHADPVSAVT >Mature_419_residues MVGAPSAALPRQRPAAVPVALPGLIPFTPPPAAASARRAGAAHAGAPPGLGDAPPAGAGAVAWLARVGSWPSHAFERVRP RWAGARLGLLAYTVGQVILLGLLYVGYSLSRHLATGREPDALGHAVDVWRLERFLRLPDEASLQGVALAHQWLPHGANWY YVGVHFPAAILLLVWVFARHRDHWRRVRNVIILATGAGLGIHLLYPLAPPRFLPRVDSSVGLVDTGMLFGPSPYGKGSGG VANQYAAMPSLHVGWAILEAWAVVTILRHRMRWLAVIQPLATVAVVVLTANHFWLDGIVGGTLVAGAVLLVGRRRPVPEQ PALVSLGFRPAVAPRPAASAGSAEVSAVSPGVSAVPPAVVPLAVVPAEPAVPTQSSAPVEPAVPAEPAVPPQHGLESPGT GNAPGDRPTAHADPVSAVT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43495; Mature: 43495
Theoretical pI: Translated: 11.08; Mature: 11.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGAPSAALPRQRPAAVPVALPGLIPFTPPPAAASARRAGAAHAGAPPGLGDAPPAGAGA CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHH VAWLARVGSWPSHAFERVRPRWAGARLGLLAYTVGQVILLGLLYVGYSLSRHLATGREPD HHHHHHHCCCHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ALGHAVDVWRLERFLRLPDEASLQGVALAHQWLPHGANWYYVGVHFPAAILLLVWVFARH HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHH RDHWRRVRNVIILATGAGLGIHLLYPLAPPRFLPRVDSSVGLVDTGMLFGPSPYGKGSGG HHHHHHHCCEEEEEECCCCCEEEEECCCCCHHHCCCCCCCCEEECCCEECCCCCCCCCCC VANQYAAMPSLHVGWAILEAWAVVTILRHRMRWLAVIQPLATVAVVVLTANHFWLDGIVG CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHH GTLVAGAVLLVGRRRPVPEQPALVSLGFRPAVAPRPAASAGSAEVSAVSPGVSAVPPAVV HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHH PLAVVPAEPAVPTQSSAPVEPAVPAEPAVPPQHGLESPGTGNAPGDRPTAHADPVSAVT CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MVGAPSAALPRQRPAAVPVALPGLIPFTPPPAAASARRAGAAHAGAPPGLGDAPPAGAGA CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHH VAWLARVGSWPSHAFERVRPRWAGARLGLLAYTVGQVILLGLLYVGYSLSRHLATGREPD HHHHHHHCCCHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH ALGHAVDVWRLERFLRLPDEASLQGVALAHQWLPHGANWYYVGVHFPAAILLLVWVFARH HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHH RDHWRRVRNVIILATGAGLGIHLLYPLAPPRFLPRVDSSVGLVDTGMLFGPSPYGKGSGG HHHHHHHCCEEEEEECCCCCEEEEECCCCCHHHCCCCCCCCEEECCCEECCCCCCCCCCC VANQYAAMPSLHVGWAILEAWAVVTILRHRMRWLAVIQPLATVAVVVLTANHFWLDGIVG CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHH GTLVAGAVLLVGRRRPVPEQPALVSLGFRPAVAPRPAASAGSAEVSAVSPGVSAVPPAVV HHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHH PLAVVPAEPAVPTQSSAPVEPAVPAEPAVPPQHGLESPGTGNAPGDRPTAHADPVSAVT CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA