Click here to switch to the map view.

The map label for this gene is aidB [H]

Identifier: 158318169

GI number: 158318169

Start: 7817594

End: 7819312

Strand: Reverse

Name: aidB [H]

Synonym: Franean1_6434

Alternate gene names: 158318169

Gene position: 7819312-7817594 (Counterclockwise)

Preceding gene: 158318170

Following gene: 158318166

Centisome position: 87.05

GC content: 75.68

Gene sequence:

>1719_bases
ATGACGGCGGCCGGCGGTGGCCCGACGCATCGCGTCACCAACCAACCACCGCCGCTGGTCGGCCACGACGTCGCCGAGGA
TCCCGCCCTGCTGGAGGCGCTGGCCCGCGAGGGCGCCGCCGGCCACGCGGACGACCTGCACCGTCTCGGCCGGCTCGCCG
GCACGGCCGAGGCGCAGCGATGGGGTGACGAGGCCAACCGGTGCCCGCCCGTCCTGCGCACGCACGACCGGTACGGGAAC
CGCGTCGACGAGGTCGACTTCCATCCGGCCTGGCACGAGCTGCTCCGCGTGGCCGTGGGCGCCGGGCTGGCAGGAGCACC
GTGGGCCGCCGACCGGCCGGGCGCGCACGTGGCCCGCGCGGCCGGGTTCCTCGTCTGGGGGCAGGTCGAGCAGGGCCATC
TGTGCCCGGTGTCGATGACCTACGCCGTCACACCGGCGCTGCGGGCCGCCCCCGACCTGGCCGCGGCCTATCTGCCCGGC
CTGACCAGCACCGTCTACGACCCGGGCCTGCGCCCGCCGCTGTCCAAGCGCGGCCTGCTCGCCGGCATGGGGATGACCGA
GAAGCAGGGCGGCTCGGACGTCCGCGCCAACGAGACCATCGCCGTCCCGGCCGGGGACGGCTCGTACCTGCTGCGCGGGC
ACAAGTGGTTCACCAGCGCCCCGATGAACGACGTGTTCCTGGTGCTGGCGCAGGCGCCGGGCGGCCTGTCGTGCCTGCTC
GTCCCGCGGGTGCTGCCGGACGGCGGTCGCAACCCCTTCCTCATCCAGCGGCTCAAGGACAAGCTCGGCAACCGCAGCAA
CGCCAGCGCCGAGCCGGAGTTCGACCGGACGCTGGGCCACCTGGTCGGAACGGAGGGCCGCGGGGTGCGCGCCATCATTG
AGATGGTCGCGCTCACCAGACTGGACTCCGCCGTCGGCGCGGCCTCCGGGATGCGCGCGGCGCTCGTCGCGGCGGCGCAT
CACACCCGCCACCGCTCGGCGTTCGGCTCGCTGCTCATAGACAAGCCGCTGATGCGCAACGTGCTGGCCGATCTCGCGGT
GGAGTCGGAGGCGGCGGTCGCGCTCGTGATGCGCGTGGCAGGCGCGGTGGACCGCGCCGAGCACGGCGACGAGGGCGAGC
GGGCCTTCCGCCGTCTCGCGACCGGCCTCGCCAAGTACTGGGTGTGCAAGCGCCAGCCGGCCATGGTCGCCGAGGCGCTC
GAATGCCTCGGCGGCAACGGGTACGTGGAGGAGTCGGGCCTGCCGCGGCTCTATCGCGAGGCCCCGCTCAACGGCATCTG
GGAGGGCTCCGGCAACGTCAACGCGCTGGACGTCGTGCGGGCCCTCGGCCGCGAGCCCGCGAGCCTGGCCGCCTACGGCG
CCGAGGTCGACGCGGCCGCCGGTGGCGACCCCCGGCTCGACACGGCGTGGCGCCGGCTCCGAGCTGAGCTGGACGACCTG
CTCACCGGCACCGGCGGCGGCGCGGCCGGCACGAGTAGGGCGGCGGGCTCGGGTGGGGTTGGCGGGGCGCCGGTGATCGA
GCTGGTCGCGCGCCGGCTCGTCGAGCGGATGGCGCTCGTGCTGCAGGGCTCGCTGCTGGTGCGGCACGCGCCCGCCGCGG
TGTCCGACGCGTTCTGCGCGGCCCGGTTGGGCGGGGACGCGGGCCTGGCCTTCGGGACCCTCCCACCCGGGCTCGACCTC
GAGGGCATCCTGCGCCGGATCCCGCCCGCCACCGCCTGA

Upstream 100 bases:

>100_bases
GCTGGCTGTCCTTCTCGGCCGGTCCTGTCCCCGTGGCCGGGCAGGTCGCCGTGGCCGGGCAGGTCCCGGCGCCGGCGGGC
GGTCCGCCCGGTGGCACCGG

Downstream 100 bases:

>100_bases
CGTCGGCTGGCGTCGGCTGGCATCGCCTGACATACGAGGTCGCGGGCCTGCCTCCCGGCTCGACGCGGGCGGCCGAGGCC
GCGACCGGGGCCGGCCAGGC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 571

Protein sequence:

>572_residues
MTAAGGGPTHRVTNQPPPLVGHDVAEDPALLEALAREGAAGHADDLHRLGRLAGTAEAQRWGDEANRCPPVLRTHDRYGN
RVDEVDFHPAWHELLRVAVGAGLAGAPWAADRPGAHVARAAGFLVWGQVEQGHLCPVSMTYAVTPALRAAPDLAAAYLPG
LTSTVYDPGLRPPLSKRGLLAGMGMTEKQGGSDVRANETIAVPAGDGSYLLRGHKWFTSAPMNDVFLVLAQAPGGLSCLL
VPRVLPDGGRNPFLIQRLKDKLGNRSNASAEPEFDRTLGHLVGTEGRGVRAIIEMVALTRLDSAVGAASGMRAALVAAAH
HTRHRSAFGSLLIDKPLMRNVLADLAVESEAAVALVMRVAGAVDRAEHGDEGERAFRRLATGLAKYWVCKRQPAMVAEAL
ECLGGNGYVEESGLPRLYREAPLNGIWEGSGNVNALDVVRALGREPASLAAYGAEVDAAAGGDPRLDTAWRRLRAELDDL
LTGTGGGAAGTSRAAGSGGVGGAPVIELVARRLVERMALVLQGSLLVRHAPAAVSDAFCAARLGGDAGLAFGTLPPGLDL
EGILRRIPPATA

Sequences:

>Translated_572_residues
MTAAGGGPTHRVTNQPPPLVGHDVAEDPALLEALAREGAAGHADDLHRLGRLAGTAEAQRWGDEANRCPPVLRTHDRYGN
RVDEVDFHPAWHELLRVAVGAGLAGAPWAADRPGAHVARAAGFLVWGQVEQGHLCPVSMTYAVTPALRAAPDLAAAYLPG
LTSTVYDPGLRPPLSKRGLLAGMGMTEKQGGSDVRANETIAVPAGDGSYLLRGHKWFTSAPMNDVFLVLAQAPGGLSCLL
VPRVLPDGGRNPFLIQRLKDKLGNRSNASAEPEFDRTLGHLVGTEGRGVRAIIEMVALTRLDSAVGAASGMRAALVAAAH
HTRHRSAFGSLLIDKPLMRNVLADLAVESEAAVALVMRVAGAVDRAEHGDEGERAFRRLATGLAKYWVCKRQPAMVAEAL
ECLGGNGYVEESGLPRLYREAPLNGIWEGSGNVNALDVVRALGREPASLAAYGAEVDAAAGGDPRLDTAWRRLRAELDDL
LTGTGGGAAGTSRAAGSGGVGGAPVIELVARRLVERMALVLQGSLLVRHAPAAVSDAFCAARLGGDAGLAFGTLPPGLDL
EGILRRIPPATA
>Mature_571_residues
TAAGGGPTHRVTNQPPPLVGHDVAEDPALLEALAREGAAGHADDLHRLGRLAGTAEAQRWGDEANRCPPVLRTHDRYGNR
VDEVDFHPAWHELLRVAVGAGLAGAPWAADRPGAHVARAAGFLVWGQVEQGHLCPVSMTYAVTPALRAAPDLAAAYLPGL
TSTVYDPGLRPPLSKRGLLAGMGMTEKQGGSDVRANETIAVPAGDGSYLLRGHKWFTSAPMNDVFLVLAQAPGGLSCLLV
PRVLPDGGRNPFLIQRLKDKLGNRSNASAEPEFDRTLGHLVGTEGRGVRAIIEMVALTRLDSAVGAASGMRAALVAAAHH
TRHRSAFGSLLIDKPLMRNVLADLAVESEAAVALVMRVAGAVDRAEHGDEGERAFRRLATGLAKYWVCKRQPAMVAEALE
CLGGNGYVEESGLPRLYREAPLNGIWEGSGNVNALDVVRALGREPASLAAYGAEVDAAAGGDPRLDTAWRRLRAELDDLL
TGTGGGAAGTSRAAGSGGVGGAPVIELVARRLVERMALVLQGSLLVRHAPAAVSDAFCAARLGGDAGLAFGTLPPGLDLE
GILRRIPPATA

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958414, Length=297, Percent_Identity=28.6195286195286, Blast_Score=91, Evalue=4e-18,
Organism=Homo sapiens, GI226958412, Length=297, Percent_Identity=28.6195286195286, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI4557233, Length=275, Percent_Identity=28.3636363636364, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI7656849, Length=371, Percent_Identity=23.1805929919137, Blast_Score=80, Evalue=7e-15,
Organism=Homo sapiens, GI4557235, Length=282, Percent_Identity=23.758865248227, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI76496475, Length=282, Percent_Identity=23.758865248227, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI4501857, Length=310, Percent_Identity=24.5161290322581, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI4501859, Length=300, Percent_Identity=25, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI4557231, Length=279, Percent_Identity=26.1648745519713, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI187960098, Length=279, Percent_Identity=26.1648745519713, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI87082384, Length=472, Percent_Identity=49.364406779661, Blast_Score=414, Evalue=1e-116,
Organism=Caenorhabditis elegans, GI86563383, Length=567, Percent_Identity=28.9241622574956, Blast_Score=194, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI86563381, Length=567, Percent_Identity=28.9241622574956, Blast_Score=194, Evalue=2e-49,
Organism=Caenorhabditis elegans, GI17538396, Length=286, Percent_Identity=30.0699300699301, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17506239, Length=278, Percent_Identity=28.0575539568345, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508101, Length=267, Percent_Identity=26.9662921348315, Blast_Score=82, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI71985184, Length=276, Percent_Identity=24.2753623188406, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17569725, Length=277, Percent_Identity=25.2707581227437, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17533517, Length=362, Percent_Identity=24.0331491712707, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71990804, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI21355753, Length=341, Percent_Identity=25.8064516129032, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281363737, Length=281, Percent_Identity=22.4199288256228, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI21356377, Length=276, Percent_Identity=27.8985507246377, Blast_Score=79, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24666513, Length=279, Percent_Identity=24.3727598566308, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 59686; Mature: 59554

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAGGGPTHRVTNQPPPLVGHDVAEDPALLEALAREGAAGHADDLHRLGRLAGTAEAQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
WGDEANRCPPVLRTHDRYGNRVDEVDFHPAWHELLRVAVGAGLAGAPWAADRPGAHVARA
HCCHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
AGFLVWGQVEQGHLCPVSMTYAVTPALRAAPDLAAAYLPGLTSTVYDPGLRPPLSKRGLL
HCEEEEECCCCCCCCCEEEHHHHCHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCE
AGMGMTEKQGGSDVRANETIAVPAGDGSYLLRGHKWFTSAPMNDVFLVLAQAPGGLSCLL
ECCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCEEECCCCCCCEEEEEECCCCCCEEEE
VPRVLPDGGRNPFLIQRLKDKLGNRSNASAEPEFDRTLGHLVGTEGRGVRAIIEMVALTR
ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LDSAVGAASGMRAALVAAAHHTRHRSAFGSLLIDKPLMRNVLADLAVESEAAVALVMRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHH
GAVDRAEHGDEGERAFRRLATGLAKYWVCKRQPAMVAEALECLGGNGYVEESGLPRLYRE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCHHHHH
APLNGIWEGSGNVNALDVVRALGREPASLAAYGAEVDAAAGGDPRLDTAWRRLRAELDDL
CCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTGTGGGAAGTSRAAGSGGVGGAPVIELVARRLVERMALVLQGSLLVRHAPAAVSDAFCA
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHH
ARLGGDAGLAFGTLPPGLDLEGILRRIPPATA
HHCCCCCCCEECCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
TAAGGGPTHRVTNQPPPLVGHDVAEDPALLEALAREGAAGHADDLHRLGRLAGTAEAQR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
WGDEANRCPPVLRTHDRYGNRVDEVDFHPAWHELLRVAVGAGLAGAPWAADRPGAHVARA
HCCHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
AGFLVWGQVEQGHLCPVSMTYAVTPALRAAPDLAAAYLPGLTSTVYDPGLRPPLSKRGLL
HCEEEEECCCCCCCCCEEEHHHHCHHHHCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCE
AGMGMTEKQGGSDVRANETIAVPAGDGSYLLRGHKWFTSAPMNDVFLVLAQAPGGLSCLL
ECCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCEEECCCCCCCEEEEEECCCCCCEEEE
VPRVLPDGGRNPFLIQRLKDKLGNRSNASAEPEFDRTLGHLVGTEGRGVRAIIEMVALTR
ECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LDSAVGAASGMRAALVAAAHHTRHRSAFGSLLIDKPLMRNVLADLAVESEAAVALVMRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHH
GAVDRAEHGDEGERAFRRLATGLAKYWVCKRQPAMVAEALECLGGNGYVEESGLPRLYRE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCHHHHH
APLNGIWEGSGNVNALDVVRALGREPASLAAYGAEVDAAAGGDPRLDTAWRRLRAELDDL
CCCCCEECCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LTGTGGGAAGTSRAAGSGGVGGAPVIELVARRLVERMALVLQGSLLVRHAPAAVSDAFCA
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCHHHHHHHHH
ARLGGDAGLAFGTLPPGLDLEGILRRIPPATA
HHCCCCCCCEECCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]