| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is ydfG [C]
Identifier: 158318150
GI number: 158318150
Start: 7789586
End: 7790473
Strand: Reverse
Name: ydfG [C]
Synonym: Franean1_6415
Alternate gene names: 158318150
Gene position: 7790473-7789586 (Counterclockwise)
Preceding gene: 158318154
Following gene: 158318149
Centisome position: 86.73
GC content: 75.0
Gene sequence:
>888_bases GTGACCGAGCATGAGACCGAGACCCGGCCCGCCGGCCCCCACGCGCCCTCACGGCCGGGTGCGGCCCCGGGGCAGGGCCC GGAGCCGCAGGGGCCCGACGATGCCGAGGCGGCCCGGCACGTCGCCATGTTCGGCCTGCCTGGCATGCCCGCCACGGGGC GGATCGCCGTCGTCACCGGTGCCACGAGCGGCATCGGCGCGGCCACCGCCCGGCGGCTCGCCGCCGACGGCGCCGTGGTC GCCGCGGTCGGCCGCCGGGAGGCGCGCCTGCGGTCCCTGGCCGACGAGAACGAGCGGATCCTGCCCGTCACGGGCGACGT GACCGACCCGGACGGGATGCGTCGCATCGCCGACCAGGTCCACGAGCGCCTCGGCCGCGCCGACCTGGTCGTCGCCAACG CCGGGACGATGCTCGCCGCACCCTGGGCCGCGGCGGACGTCGACGAGTGGCGCCGCATGATCGACACCAATCTGGTCGGG CTGCTGTGGACGGGCCGGGTGTTCATCGACGACCTGCTGGCCGCCGCCGCGGAGGGCCGGCGCGCGGACCTCGTCCACAT CGGCTCGGTCGGCGGCCACCAGGTCTTCCCGAACTTCGCGGTCTACGACGCGACGAAGGTCGCCATCGAGCATCTGACCC GTCACCTGCGCGTCGAGCTGGGCCCCCGGGGGGTGCGGGTGCGCACGGTCGAGCCCGGCCTGGTGCAGACCGAACTGGGC GACGACATGGTCTTCCCTGGCTCCCGCGAGGCGCTCGCCGAGTTGCGCAGGTCAGTCGCAAACCCCCTGAGTGACGTGGA CGTCGCCGAGGTCATCGCCTGGTCGGCCTCCGCCCCACCCCACGTGAACGTCGCGGAACTCGTCGTAGTCCCGGTGTCCC AGGGCTGA
Upstream 100 bases:
>100_bases GCATCGGCTCCGTTTCGATCTACTGCATCGACGCGGAGACGGACCCTCGCGGATGAACGCACGGCGCGCGATCATGGGCG GAAGGTGACACCCTCGACCG
Downstream 100 bases:
>100_bases CCCCACGCACCCACCTGGGACGTCTGGATGATCGGCCGGGTCCTCGTGAAGGGCCAGGACGACCTCCCCGCCGCGCGCCC CACCCCGTCCGGAGCCTGCG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 294
Protein sequence:
>295_residues MTEHETETRPAGPHAPSRPGAAPGQGPEPQGPDDAEAARHVAMFGLPGMPATGRIAVVTGATSGIGAATARRLAADGAVV AAVGRREARLRSLADENERILPVTGDVTDPDGMRRIADQVHERLGRADLVVANAGTMLAAPWAAADVDEWRRMIDTNLVG LLWTGRVFIDDLLAAAAEGRRADLVHIGSVGGHQVFPNFAVYDATKVAIEHLTRHLRVELGPRGVRVRTVEPGLVQTELG DDMVFPGSREALAELRRSVANPLSDVDVAEVIAWSASAPPHVNVAELVVVPVSQG
Sequences:
>Translated_295_residues MTEHETETRPAGPHAPSRPGAAPGQGPEPQGPDDAEAARHVAMFGLPGMPATGRIAVVTGATSGIGAATARRLAADGAVV AAVGRREARLRSLADENERILPVTGDVTDPDGMRRIADQVHERLGRADLVVANAGTMLAAPWAAADVDEWRRMIDTNLVG LLWTGRVFIDDLLAAAAEGRRADLVHIGSVGGHQVFPNFAVYDATKVAIEHLTRHLRVELGPRGVRVRTVEPGLVQTELG DDMVFPGSREALAELRRSVANPLSDVDVAEVIAWSASAPPHVNVAELVVVPVSQG >Mature_294_residues TEHETETRPAGPHAPSRPGAAPGQGPEPQGPDDAEAARHVAMFGLPGMPATGRIAVVTGATSGIGAATARRLAADGAVVA AVGRREARLRSLADENERILPVTGDVTDPDGMRRIADQVHERLGRADLVVANAGTMLAAPWAAADVDEWRRMIDTNLVGL LWTGRVFIDDLLAAAAEGRRADLVHIGSVGGHQVFPNFAVYDATKVAIEHLTRHLRVELGPRGVRVRTVEPGLVQTELGD DMVFPGSREALAELRRSVANPLSDVDVAEVIAWSASAPPHVNVAELVVVPVSQG
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=189, Percent_Identity=34.3915343915344, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI109715829, Length=262, Percent_Identity=26.7175572519084, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI5031737, Length=208, Percent_Identity=30.2884615384615, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=28.1081081081081, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI40548397, Length=195, Percent_Identity=32.8205128205128, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI214010158, Length=195, Percent_Identity=32.8205128205128, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI214010156, Length=195, Percent_Identity=32.8205128205128, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI22758144, Length=195, Percent_Identity=32.8205128205128, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI19923817, Length=237, Percent_Identity=23.6286919831224, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=29.296875, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=246, Percent_Identity=27.6422764227642, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI226371731, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=30.4568527918782, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI223718074, Length=200, Percent_Identity=32, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI209862901, Length=201, Percent_Identity=32.3383084577114, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI19923983, Length=201, Percent_Identity=32.3383084577114, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI10190704, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI15277342, Length=199, Percent_Identity=29.6482412060301, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=28.643216080402, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787820, Length=242, Percent_Identity=33.0578512396694, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=30.4123711340206, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082100, Length=240, Percent_Identity=30.8333333333333, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=26.1224489795918, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789378, Length=195, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71994604, Length=248, Percent_Identity=27.4193548387097, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562906, Length=244, Percent_Identity=28.6885245901639, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17562910, Length=209, Percent_Identity=29.1866028708134, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17559104, Length=244, Percent_Identity=27.4590163934426, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193204405, Length=247, Percent_Identity=27.1255060728745, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562908, Length=247, Percent_Identity=28.3400809716599, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562904, Length=212, Percent_Identity=28.7735849056604, Blast_Score=88, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17560220, Length=206, Percent_Identity=28.1553398058252, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560150, Length=205, Percent_Identity=28.780487804878, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=23.3870967741935, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17544670, Length=210, Percent_Identity=28.0952380952381, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17538480, Length=204, Percent_Identity=28.4313725490196, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17531453, Length=254, Percent_Identity=27.9527559055118, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=27.9187817258883, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565030, Length=200, Percent_Identity=29, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=27.363184079602, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI72000259, Length=196, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17563726, Length=204, Percent_Identity=25.4901960784314, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17562990, Length=205, Percent_Identity=27.8048780487805, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17560676, Length=237, Percent_Identity=25.3164556962025, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17551412, Length=196, Percent_Identity=27.5510204081633, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115534694, Length=208, Percent_Identity=30.7692307692308, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25147288, Length=230, Percent_Identity=28.695652173913, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17555706, Length=200, Percent_Identity=26, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=219, Percent_Identity=30.5936073059361, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322227, Length=200, Percent_Identity=24.5, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=26.1780104712042, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324126, Length=196, Percent_Identity=23.469387755102, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=32.6771653543307, Blast_Score=117, Evalue=1e-26, Organism=Drosophila melanogaster, GI281364494, Length=259, Percent_Identity=31.6602316602317, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=30.1020408163265, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.7269076305221, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=30.3664921465969, Blast_Score=101, Evalue=6e-22, Organism=Drosophila melanogaster, GI21357041, Length=191, Percent_Identity=30.3664921465969, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24663911, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24648693, Length=264, Percent_Identity=32.1969696969697, Blast_Score=98, Evalue=8e-21, Organism=Drosophila melanogaster, GI21355889, Length=264, Percent_Identity=32.1969696969697, Blast_Score=98, Evalue=8e-21, Organism=Drosophila melanogaster, GI24641232, Length=256, Percent_Identity=28.515625, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24641388, Length=265, Percent_Identity=32.4528301886792, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI116007238, Length=194, Percent_Identity=31.9587628865979, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI21355319, Length=197, Percent_Identity=28.4263959390863, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24648944, Length=246, Percent_Identity=28.4552845528455, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24643142, Length=194, Percent_Identity=31.9587628865979, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI28571387, Length=260, Percent_Identity=28.0769230769231, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI116007234, Length=260, Percent_Identity=28.0769230769231, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24644337, Length=200, Percent_Identity=30.5, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28574402, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24584744, Length=206, Percent_Identity=28.1553398058252, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=195, Percent_Identity=31.2820512820513, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI24584752, Length=203, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI17737361, Length=194, Percent_Identity=30.4123711340206, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007232, Length=190, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24656154, Length=208, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI19922628, Length=208, Percent_Identity=31.25, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24640442, Length=202, Percent_Identity=26.7326732673267, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31067; Mature: 30936
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHETETRPAGPHAPSRPGAAPGQGPEPQGPDDAEAARHVAMFGLPGMPATGRIAVVTG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC ATSGIGAATARRLAADGAVVAAVGRREARLRSLADENERILPVTGDVTDPDGMRRIADQV CCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH HERLGRADLVVANAGTMLAAPWAAADVDEWRRMIDTNLVGLLWTGRVFIDDLLAAAAEGR HHHHCCCEEEEECCCCEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCCCC RADLVHIGSVGGHQVFPNFAVYDATKVAIEHLTRHLRVELGPRGVRVRTVEPGLVQTELG CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCEEEECCC DDMVFPGSREALAELRRSVANPLSDVDVAEVIAWSASAPPHVNVAELVVVPVSQG CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCC >Mature Secondary Structure TEHETETRPAGPHAPSRPGAAPGQGPEPQGPDDAEAARHVAMFGLPGMPATGRIAVVTG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC ATSGIGAATARRLAADGAVVAAVGRREARLRSLADENERILPVTGDVTDPDGMRRIADQV CCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH HERLGRADLVVANAGTMLAAPWAAADVDEWRRMIDTNLVGLLWTGRVFIDDLLAAAAEGR HHHHCCCEEEEECCCCEEECCCCCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHCCCC RADLVHIGSVGGHQVFPNFAVYDATKVAIEHLTRHLRVELGPRGVRVRTVEPGLVQTELG CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEEECCCEEEECCC DDMVFPGSREALAELRRSVANPLSDVDVAEVIAWSASAPPHVNVAELVVVPVSQG CCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA