| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158318075
Identifier: 158318075
GI number: 158318075
Start: 7696373
End: 7697266
Strand: Reverse
Name: 158318075
Synonym: Franean1_6336
Alternate gene names: NA
Gene position: 7697266-7696373 (Counterclockwise)
Preceding gene: 158318076
Following gene: 158318071
Centisome position: 85.7
GC content: 62.3
Gene sequence:
>894_bases ATGGGGCTGGTCGATCGAAGATCAATCAATGTGCTGACGATTGCCCTCGTTGCCCTCGTAGCTGTAGGCGGCGCGCTCAC GGTGTGTGTTGTCTTTGGTCCCGCCTGGATCGTGGATCGCCGCAACGTCTCCGGGGCGGCTCTGACACAAGCGGAGCGGT TGGGAGCTGAGAACGATGTCCGTTCCACGCTGCTCCAGGGACTCGGCGGACTAGTCGCTCTCGTCGGTGTGTTCCTCGGT GCGGCGATTACCTTGCGCCAGGTCCGTGTCAGCCGCGAAGGTCAGACAATCGATCTTTTTGTCAAAGCGATCGATCAGCT GGCAAGCGACGTGCTATCCGTCCGGTTCGGTGGAATCTACGCGCTGGAACTCCTGTCCGACCTTGACTCGCGCTACCGAG GGCAGGTCCACGCACTGCTTACCTCCTTCGTGCGCCAGAACGCGCCTTGGCCGCCACACCGCCCGGAATCGGACGTTGGG CCGGATCGAAGCCGGTACCATGGCAGCGTAGCCGATGATGTTGGAGCGGCCCTTGCCGCACTCCAGCGAGGCTCGATGAT CCTCGATGATGCCTGGTCGGAGTTGGAACGGGTCGATCTACGCGACGCCGAGTTGGACGCGTTCGACATGCCGCGCGTGT GTTTCGCCCACTCCAACCTTGCGGGTGCCAGCATGATTGCCGCCAAGCTGGCTGGCGCCACCCTTTCCGATGCGATTCTA CGTAGCACCGACCTCAGCCGAGCCGACCTTCGAGGAGCCGACCTCTCCCGAGCCGACCTTAGCGGCGCCAAGCTTCTCGG AGCCGACCTTTCCGGTGCCGAATTGGACGCCACCCGCCTAGATGGCGTGATTACCGACGGCGAAACTAAATGGCCCAGAG ATTTTACGCCTTAG
Upstream 100 bases:
>100_bases CACCACATCAGCGAAGACCACCCGGACAAAACAAGTCGCGTCCCGGACAGCGGAGCAAGACGGTACATTTGCCGCGGCAG TCTCAGCCGAGGGGGTTTCC
Downstream 100 bases:
>100_bases GCTTCAATCTTTCGCGCATCCGGTATGCGTGATCGTGAGTCGTCCTCCTCGCATTGTTGATGTTGAATTGTCGGGTCCGT CCGGTGTCGAGTGTGGCCGG
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: Pentapeptide Repeat Protein
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MGLVDRRSINVLTIALVALVAVGGALTVCVVFGPAWIVDRRNVSGAALTQAERLGAENDVRSTLLQGLGGLVALVGVFLG AAITLRQVRVSREGQTIDLFVKAIDQLASDVLSVRFGGIYALELLSDLDSRYRGQVHALLTSFVRQNAPWPPHRPESDVG PDRSRYHGSVADDVGAALAALQRGSMILDDAWSELERVDLRDAELDAFDMPRVCFAHSNLAGASMIAAKLAGATLSDAIL RSTDLSRADLRGADLSRADLSGAKLLGADLSGAELDATRLDGVITDGETKWPRDFTP
Sequences:
>Translated_297_residues MGLVDRRSINVLTIALVALVAVGGALTVCVVFGPAWIVDRRNVSGAALTQAERLGAENDVRSTLLQGLGGLVALVGVFLG AAITLRQVRVSREGQTIDLFVKAIDQLASDVLSVRFGGIYALELLSDLDSRYRGQVHALLTSFVRQNAPWPPHRPESDVG PDRSRYHGSVADDVGAALAALQRGSMILDDAWSELERVDLRDAELDAFDMPRVCFAHSNLAGASMIAAKLAGATLSDAIL RSTDLSRADLRGADLSRADLSGAKLLGADLSGAELDATRLDGVITDGETKWPRDFTP >Mature_296_residues GLVDRRSINVLTIALVALVAVGGALTVCVVFGPAWIVDRRNVSGAALTQAERLGAENDVRSTLLQGLGGLVALVGVFLGA AITLRQVRVSREGQTIDLFVKAIDQLASDVLSVRFGGIYALELLSDLDSRYRGQVHALLTSFVRQNAPWPPHRPESDVGP DRSRYHGSVADDVGAALAALQRGSMILDDAWSELERVDLRDAELDAFDMPRVCFAHSNLAGASMIAAKLAGATLSDAILR STDLSRADLRGADLSRADLSGAKLLGADLSGAELDATRLDGVITDGETKWPRDFTP
Specific function: Unknown
COG id: COG1357
COG function: function code S; Uncharacterized low-complexity proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31554; Mature: 31423
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLVDRRSINVLTIALVALVAVGGALTVCVVFGPAWIVDRRNVSGAALTQAERLGAENDV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHCCCCHHH RSTLLQGLGGLVALVGVFLGAAITLRQVRVSREGQTIDLFVKAIDQLASDVLSVRFGGIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH ALELLSDLDSRYRGQVHALLTSFVRQNAPWPPHRPESDVGPDRSRYHGSVADDVGAALAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH LQRGSMILDDAWSELERVDLRDAELDAFDMPRVCFAHSNLAGASMIAAKLAGATLSDAIL HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHH RSTDLSRADLRGADLSRADLSGAKLLGADLSGAELDATRLDGVITDGETKWPRDFTP HHCCCCHHHCCCCCCCHHHCCCCEEECCCCCCCCCCHHHHCCEEECCCCCCCCCCCC >Mature Secondary Structure GLVDRRSINVLTIALVALVAVGGALTVCVVFGPAWIVDRRNVSGAALTQAERLGAENDV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCHHHHHHHHCCCCHHH RSTLLQGLGGLVALVGVFLGAAITLRQVRVSREGQTIDLFVKAIDQLASDVLSVRFGGIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH ALELLSDLDSRYRGQVHALLTSFVRQNAPWPPHRPESDVGPDRSRYHGSVADDVGAALAA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHH LQRGSMILDDAWSELERVDLRDAELDAFDMPRVCFAHSNLAGASMIAAKLAGATLSDAIL HHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCHHHHHHH RSTDLSRADLRGADLSRADLSGAKLLGADLSGAELDATRLDGVITDGETKWPRDFTP HHCCCCHHHCCCCCCCHHHCCCCEEECCCCCCCCCCHHHHCCEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA