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The map label for this gene is strM [H]

Identifier: 158318027

GI number: 158318027

Start: 7636717

End: 7637313

Strand: Direct

Name: strM [H]

Synonym: Franean1_6287

Alternate gene names: 158318027

Gene position: 7636717-7637313 (Clockwise)

Preceding gene: 158318024

Following gene: 158318028

Centisome position: 85.02

GC content: 70.85

Gene sequence:

>597_bases
TTGGCTACCCCCCTCGACGGCCGGATCGAGGTCCGCCCCCTGAGCATTGAGGGCGCGTTCCTGTTCGTTTTCCCCGACCA
GCAGGACCAGCGCGGCAGCCGGCGGTCGTGGTTCGACGAGCAGGTCGTCCACACCGCAACCGGACGGCCCCTCGGTCCGG
TCCTGGCGAACGTGACGGTCTCTCACCAGGGGGCGCTGCGCGGCATCAAGTACAGCCGTGACGGCCGTGCAGGCAAATAC
GTCAGCTGCCTGAGCGGCATGGTCCTGGATGTGGTGGTCGACCTGCGGGTCGGATCGCCGACGTTCGGCGCCAGCCACAT
CAGGCGCCTCGACGGCGGTCAGCCCGTCGGCCTGTTCCTCGCTCCGGGCCTGGGCCACGCGACGCTCGCGCTCACCGAGC
AGGCGGCCATGGCCTACCTGCATCCCGCACATGACGAAGGGCCGGAGGTCGCGGTCCACCCGTTCGACTCCGATCTGTCC
ATCGCCTGGCCGTCGGGCCTGTCGTTCCTGCTGTCCGACGGCGACACCGCCGCGCCCACCCTCGGCCAGGCCCGCGACGC
CGGCCTGCTGCCCGCCTACCTCGGAGGAGAGCCATGA

Upstream 100 bases:

>100_bases
GACGCCGACGACTTGGACTTCGTTTGCGCCCCGTATCGCGTTCGACCGTAACCCCTCACGGCAAAGAGCCCTAGCCCACC
GATCACCAAGGAGACATCTC

Downstream 100 bases:

>100_bases
GGCTGCGGAATGTTCTGGTGACGGGAGGAGCCGGATTCATCGGCTCCCACCTCGTCGTCCGTCTGATCAGCAACCCGACG
GTCGAAAAGGTGACGGTGCT

Product: dTDP-4-dehydrorhamnose 35-epimerase-like protein

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthetase [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MATPLDGRIEVRPLSIEGAFLFVFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTVSHQGALRGIKYSRDGRAGKY
VSCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFLAPGLGHATLALTEQAAMAYLHPAHDEGPEVAVHPFDSDLS
IAWPSGLSFLLSDGDTAAPTLGQARDAGLLPAYLGGEP

Sequences:

>Translated_198_residues
MATPLDGRIEVRPLSIEGAFLFVFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTVSHQGALRGIKYSRDGRAGKY
VSCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFLAPGLGHATLALTEQAAMAYLHPAHDEGPEVAVHPFDSDLS
IAWPSGLSFLLSDGDTAAPTLGQARDAGLLPAYLGGEP
>Mature_197_residues
ATPLDGRIEVRPLSIEGAFLFVFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTVSHQGALRGIKYSRDGRAGKYV
SCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFLAPGLGHATLALTEQAAMAYLHPAHDEGPEVAVHPFDSDLSI
AWPSGLSFLLSDGDTAAPTLGQARDAGLLPAYLGGEP

Specific function: Involved in the biosynthesis of the streptose moiety of streptomycin. Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6- deoxy-L-lyxo-4-hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17550412, Length=162, Percent_Identity=30.8641975308642, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 20934; Mature: 20803

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPLDGRIEVRPLSIEGAFLFVFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTV
CCCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHEEEEEE
SHQGALRGIKYSRDGRAGKYVSCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFL
CCCCCCCCCEECCCCCCCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEE
APGLGHATLALTEQAAMAYLHPAHDEGPEVAVHPFDSDLSIAWPSGLSFLLSDGDTAAPT
ECCCCCEEEEEHHHHHHHEECCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCC
LGQARDAGLLPAYLGGEP
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATPLDGRIEVRPLSIEGAFLFVFPDQQDQRGSRRSWFDEQVVHTATGRPLGPVLANVTV
CCCCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCHHEEEEEE
SHQGALRGIKYSRDGRAGKYVSCLSGMVLDVVVDLRVGSPTFGASHIRRLDGGQPVGLFL
CCCCCCCCCEECCCCCCCHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHCCCCCCEEEEE
APGLGHATLALTEQAAMAYLHPAHDEGPEVAVHPFDSDLSIAWPSGLSFLLSDGDTAAPT
ECCCCCEEEEEHHHHHHHEECCCCCCCCCEEEEECCCCCEEECCCCCEEEEECCCCCCCC
LGQARDAGLLPAYLGGEP
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661369 [H]