| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158317974
Identifier: 158317974
GI number: 158317974
Start: 7571526
End: 7572734
Strand: Direct
Name: 158317974
Synonym: Franean1_6234
Alternate gene names: NA
Gene position: 7571526-7572734 (Clockwise)
Preceding gene: 158317966
Following gene: 158317980
Centisome position: 84.3
GC content: 68.49
Gene sequence:
>1209_bases GTGCGCTTAGGTAGAACAACACGGTTACTCGGTGTGGCTGCCGCGGTTCTCGTTGCGGCAGCCACGGGTTGCTCCTCGAC ACCGGGGGCCGCAAGTGCCGCGGTGTGTGACAGTCCTGGCGTCACCCCCGGCGAGGTGAACCTCGGCCTGGTGTTCTCCG ATTCGGGCGTGGGCAGTGCCGCGTTTGCCTCGGCCCGAGCCGGCGCGGACGCACGGTTCGGCCTGGCCAACGAGGAGGGC GGGGTACACGGCCGGAAGATCGTCTACCAGTGGCGTGACGACGCGAACGACCCCGCCCAGAACGCCCGCGTCATCCAGGA GCTCCTCCGCGGCGACAGTGCTTTCGGCCTCGTGACGATCACCACCGCCTTCGGCAGCGCACCGGCCGACCTGGCGAAGC AGAACGTTCCCGTCATCGGGTTCGGTCTGCCGACCTTGGCCGAGTACCAGAACATGTTCTCCACCATGTACCAGGCCTCG CCGGTCACGATCGGCCGCTACCTCCGGGACAGCGGTGGCAGCAAGGTCGGCGTCGTGATCACGGGGTCGTCGGCGTCCAC TTTGGATATCATCAAGATGTACAAGAGCGCCTTCGAGTCGGTCGGGCTCACCGTGGCCGACACCATCTCCTACGCGCACA GCGTTGACAGCCCGGCCCGCGTGGCCCAGCAGCTGGCGGCCTCCGGCGTCAACGCGCTGGTTGGCTTCACGACCACCGAG GATCTCGCCGAGATCATGGGCGCCGTACGTACGGCGAACCTGAACCTCGCCACCACCGTCTCGTTCACCGGGTACGACCG GGGCCTGCTGCCCACCCTGGGCCCGGCACTCGCGGGCGTCTCGATCCCCGCGTACTTCCGCCCCTTCGAGGCGGGCGGCG CGGCCATCGACCGGTACCGCGCCGCGATGGTCCGCTACGCGCCGGAAGCCACGCAGCCAGACCAGCAGTTCGCGATGAAC GCGTACATCTACGCCGACATGTTCGTACGCGGGCTCGACCTCGCAGGTGACTGCCCCACCCGTGACGGGTTCATCAGCGC GCTGCGGTCAGCGTCCGACTACGACGCGGGCGGCCTGATCGAACCCGTCAACCTGGCCACGAATCGTACCGGGGCGCTCA ACTGCTACGCCTTCGTCCAGGTCAACCCCACGGGCACCGGGTTCCAGGTCGCCCGCCCACGCCTCTGCGCCGACGGCACG ACCGGCTGA
Upstream 100 bases:
>100_bases TAAATGAGCTAGAGAAATGACCTCACCGACGGCAGGAGAGAAGCTGGTGCGCCGCGCCGGCGCCCTCCACCGTCCGCGGC TATCCATCGTGGAGGTACGG
Downstream 100 bases:
>100_bases AGTAGGCGGCGCGATGCCGGGACCGCGCCGACCACCGCTGTCAGTCCGCTTTGGACGCGATGCCCTCGTAGGCGAAGCCG AAGAACTCGGGCCCGCCCAT
Product: putative Leu/Ile/Val-binding lipoprotein transmembrane
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MRLGRTTRLLGVAAAVLVAAATGCSSTPGAASAAVCDSPGVTPGEVNLGLVFSDSGVGSAAFASARAGADARFGLANEEG GVHGRKIVYQWRDDANDPAQNARVIQELLRGDSAFGLVTITTAFGSAPADLAKQNVPVIGFGLPTLAEYQNMFSTMYQAS PVTIGRYLRDSGGSKVGVVITGSSASTLDIIKMYKSAFESVGLTVADTISYAHSVDSPARVAQQLAASGVNALVGFTTTE DLAEIMGAVRTANLNLATTVSFTGYDRGLLPTLGPALAGVSIPAYFRPFEAGGAAIDRYRAAMVRYAPEATQPDQQFAMN AYIYADMFVRGLDLAGDCPTRDGFISALRSASDYDAGGLIEPVNLATNRTGALNCYAFVQVNPTGTGFQVARPRLCADGT TG
Sequences:
>Translated_402_residues MRLGRTTRLLGVAAAVLVAAATGCSSTPGAASAAVCDSPGVTPGEVNLGLVFSDSGVGSAAFASARAGADARFGLANEEG GVHGRKIVYQWRDDANDPAQNARVIQELLRGDSAFGLVTITTAFGSAPADLAKQNVPVIGFGLPTLAEYQNMFSTMYQAS PVTIGRYLRDSGGSKVGVVITGSSASTLDIIKMYKSAFESVGLTVADTISYAHSVDSPARVAQQLAASGVNALVGFTTTE DLAEIMGAVRTANLNLATTVSFTGYDRGLLPTLGPALAGVSIPAYFRPFEAGGAAIDRYRAAMVRYAPEATQPDQQFAMN AYIYADMFVRGLDLAGDCPTRDGFISALRSASDYDAGGLIEPVNLATNRTGALNCYAFVQVNPTGTGFQVARPRLCADGT TG >Mature_402_residues MRLGRTTRLLGVAAAVLVAAATGCSSTPGAASAAVCDSPGVTPGEVNLGLVFSDSGVGSAAFASARAGADARFGLANEEG GVHGRKIVYQWRDDANDPAQNARVIQELLRGDSAFGLVTITTAFGSAPADLAKQNVPVIGFGLPTLAEYQNMFSTMYQAS PVTIGRYLRDSGGSKVGVVITGSSASTLDIIKMYKSAFESVGLTVADTISYAHSVDSPARVAQQLAASGVNALVGFTTTE DLAEIMGAVRTANLNLATTVSFTGYDRGLLPTLGPALAGVSIPAYFRPFEAGGAAIDRYRAAMVRYAPEATQPDQQFAMN AYIYADMFVRGLDLAGDCPTRDGFISALRSASDYDAGGLIEPVNLATNRTGALNCYAFVQVNPTGTGFQVARPRLCADGT TG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41546; Mature: 41546
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGRTTRLLGVAAAVLVAAATGCSSTPGAASAAVCDSPGVTPGEVNLGLVFSDSGVGSA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCHH AFASARAGADARFGLANEEGGVHGRKIVYQWRDDANDPAQNARVIQELLRGDSAFGLVTI HHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE TTAFGSAPADLAKQNVPVIGFGLPTLAEYQNMFSTMYQASPVTIGRYLRDSGGSKVGVVI EECCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEE TGSSASTLDIIKMYKSAFESVGLTVADTISYAHSVDSPARVAQQLAASGVNALVGFTTTE ECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCHH DLAEIMGAVRTANLNLATTVSFTGYDRGLLPTLGPALAGVSIPAYFRPFEAGGAAIDRYR HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHH AAMVRYAPEATQPDQQFAMNAYIYADMFVRGLDLAGDCPTRDGFISALRSASDYDAGGLI HHHHHCCCCCCCCHHHHHHHHHEEEHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC EPVNLATNRTGALNCYAFVQVNPTGTGFQVARPRLCADGTTG CCCHHCCCCCCCEEEEEEEEECCCCCCCEECCCEECCCCCCC >Mature Secondary Structure MRLGRTTRLLGVAAAVLVAAATGCSSTPGAASAAVCDSPGVTPGEVNLGLVFSDSGVGSA CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCCCHH AFASARAGADARFGLANEEGGVHGRKIVYQWRDDANDPAQNARVIQELLRGDSAFGLVTI HHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEE TTAFGSAPADLAKQNVPVIGFGLPTLAEYQNMFSTMYQASPVTIGRYLRDSGGSKVGVVI EECCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEE TGSSASTLDIIKMYKSAFESVGLTVADTISYAHSVDSPARVAQQLAASGVNALVGFTTTE ECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCHH DLAEIMGAVRTANLNLATTVSFTGYDRGLLPTLGPALAGVSIPAYFRPFEAGGAAIDRYR HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHCCCCCHHCCCCCCCCHHHHHHH AAMVRYAPEATQPDQQFAMNAYIYADMFVRGLDLAGDCPTRDGFISALRSASDYDAGGLI HHHHHCCCCCCCCHHHHHHHHHEEEHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC EPVNLATNRTGALNCYAFVQVNPTGTGFQVARPRLCADGTTG CCCHHCCCCCCCEEEEEEEEECCCCCCCEECCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA