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The map label for this gene is ymdB [C]

Identifier: 158317902

GI number: 158317902

Start: 7494364

End: 7494888

Strand: Direct

Name: ymdB [C]

Synonym: Franean1_6160

Alternate gene names: 158317902

Gene position: 7494364-7494888 (Clockwise)

Preceding gene: 158317901

Following gene: 158317904

Centisome position: 83.44

GC content: 73.52

Gene sequence:

>525_bases
ATGGTCACGGTGAGGCTAGTTCAGGGCGACATCACCACCCAGGCCGTGGACGCGATCGTCAACGCCGCCAAATCGTCGCT
GCTTGGTGGCGGCGGCGTCGACGGGGCGATCCACGCCGCCGGCGGACCCGACATCCTGGCCGCCTGCCGCCGTCTTCGGG
CCGGTGCCCTGCCCGGCGGGCTACCCGTCGGCGAGGCCGTCGCGACCACCGCCGGCCGGCTCACCGCGAAGCACGTCATC
CACACCGTCGGGCCGGTCCACACCCCCCACGAGGACCGGTCCCACCTGCTCCGGTCGTGCTACGCGCGTTCCCTGGCCGT
CGCGGACGAGATCGGGGCCCGGACCCTCGCGCTGCCCGCGGTGAGCGCGGGGGCCTACGGCTGGCCGGCCCGCGACGCCG
CCGGCATCGCCGTGACCACCGTGCTCACCACCCCCAGCTCGGTCACCGAGGCCCGCTTCGTCCTGTTCGACCAGGCCATG
CTGCGGATCTTCAACGAAGCCCTCGAGAACGCCACGACCGGCTGA

Upstream 100 bases:

>100_bases
CGACCAACTCCGCCACGCCTCCATCGCATCGCAGGCCGTTGACGTCTGGCAAACGGACATTCCCGCGAGAGGCCCACTCT
GGTCTCGGTACTGTGTCCGC

Downstream 100 bases:

>100_bases
AGCGCCTCAGGACGTCCGCGGCGGGCGGGGTGGCCAGGCGACGGTGAGCTCGCCGAGGCGCCACCGGCGCGGGCCGTCCA
GCACCGACCAGCCGTCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MVTVRLVQGDITTQAVDAIVNAAKSSLLGGGGVDGAIHAAGGPDILAACRRLRAGALPGGLPVGEAVATTAGRLTAKHVI
HTVGPVHTPHEDRSHLLRSCYARSLAVADEIGARTLALPAVSAGAYGWPARDAAGIAVTTVLTTPSSVTEARFVLFDQAM
LRIFNEALENATTG

Sequences:

>Translated_174_residues
MVTVRLVQGDITTQAVDAIVNAAKSSLLGGGGVDGAIHAAGGPDILAACRRLRAGALPGGLPVGEAVATTAGRLTAKHVI
HTVGPVHTPHEDRSHLLRSCYARSLAVADEIGARTLALPAVSAGAYGWPARDAAGIAVTTVLTTPSSVTEARFVLFDQAM
LRIFNEALENATTG
>Mature_174_residues
MVTVRLVQGDITTQAVDAIVNAAKSSLLGGGGVDGAIHAAGGPDILAACRRLRAGALPGGLPVGEAVATTAGRLTAKHVI
HTVGPVHTPHEDRSHLLRSCYARSLAVADEIGARTLALPAVSAGAYGWPARDAAGIAVTTVLTTPSSVTEARFVLFDQAM
LRIFNEALENATTG

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=171, Percent_Identity=43.2748538011696, Blast_Score=123, Evalue=7e-29,
Organism=Homo sapiens, GI13569840, Length=169, Percent_Identity=42.603550295858, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI154813199, Length=132, Percent_Identity=37.8787878787879, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI226371718, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371716, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371714, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371712, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371710, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371706, Length=136, Percent_Identity=34.5588235294118, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=30, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=44.9704142011834, Blast_Score=125, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=42.3529411764706, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17709; Mature: 17709

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTVRLVQGDITTQAVDAIVNAAKSSLLGGGGVDGAIHAAGGPDILAACRRLRAGALPGG
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCC
LPVGEAVATTAGRLTAKHVIHTVGPVHTPHEDRSHLLRSCYARSLAVADEIGARTLALPA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
VSAGAYGWPARDAAGIAVTTVLTTPSSVTEARFVLFDQAMLRIFNEALENATTG
CCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVTVRLVQGDITTQAVDAIVNAAKSSLLGGGGVDGAIHAAGGPDILAACRRLRAGALPGG
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCC
LPVGEAVATTAGRLTAKHVIHTVGPVHTPHEDRSHLLRSCYARSLAVADEIGARTLALPA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCC
VSAGAYGWPARDAAGIAVTTVLTTPSSVTEARFVLFDQAMLRIFNEALENATTG
CCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]