| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is gpmA [H]
Identifier: 158317890
GI number: 158317890
Start: 7480340
End: 7481077
Strand: Reverse
Name: gpmA [H]
Synonym: Franean1_6148
Alternate gene names: 158317890
Gene position: 7481077-7480340 (Counterclockwise)
Preceding gene: 158317893
Following gene: 158317888
Centisome position: 83.29
GC content: 70.6
Gene sequence:
>738_bases ATGCCGACGCTCGTCCTGCTCCGCCACGGCGAGAGCACGTGGAACCGTGAGAACCTGTTCACCGGCTGGGTGGACGTCGA TCTGTCCGAGAAGGGCCTCAAGGAGGCCACGCGCGGCGGGGAGCTGCTCCAGGAGGCGGGCGTCCTGCCCGACGTGGTGC ACACCTCGCTGCTCACCCGGGCCATCCGCACCGCGTGGCTCGCCCTGGACGCGGCCGGCCGCACCTGGGTGCCGGTGCGC CGCAGCTGGCGTCTCAACGAGCGGCACTACGGCGGCCTGCAGGGGCTGAACAAGGCGGAGACCCTGGCGAAGTTCGGCGA CGAGCAGTTCCTGCTCTGGCGCCGCTCCTACGACACGCCGCCGCCGCCCATCGAGCCGGGCCAGCCGAGCGGCGTCGACG AGCGGTACGCCGACCTCGCTCCCGATGTGATCCCGCTCACCGAATGCCTGCGCGACGTCGTTGTCCGGATGCTGCCCTAC TGGTATGACTCGATCGTCCCGGACCTGCGCTCCGGCGCGACGGTGCTCGTCACGGCGCACGGGAACTCGCTGCGGGCGCT GGTCAAGCACCTCGACGGGATCTCCGACACCGACATCGCGAACCTGAACATCCCGACCGGCATCCCGCTGCGCTACGAGC TGGACGACGATCTCAAGGTGCTGGACTCGGGCTATCTCGACCCGGCCGCGGCGGAGACCGCCGCCGCGGCCGTCGCGGCT CAGGGCAAGAAGAAGTAG
Upstream 100 bases:
>100_bases TGCGGGGCGGAGCACCCGGGGGTCGCTGCGTTCCCGGCGGTGCGTGTGGACCAGCGGAGGACACTGGCCGAGTACCGGGC CGAGCGGGCAGGATTCACCT
Downstream 100 bases:
>100_bases TCGCCGGGCGGGCGGCACGGGCCGCGGCGCGGCGGGACACCGGGCGGTGCGGGCGGGTGGCCGAAGGCTGGGAGCTGGCA GCCGAGCGCGGGGGCCGAGC
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MPTLVLLRHGESTWNRENLFTGWVDVDLSEKGLKEATRGGELLQEAGVLPDVVHTSLLTRAIRTAWLALDAAGRTWVPVR RSWRLNERHYGGLQGLNKAETLAKFGDEQFLLWRRSYDTPPPPIEPGQPSGVDERYADLAPDVIPLTECLRDVVVRMLPY WYDSIVPDLRSGATVLVTAHGNSLRALVKHLDGISDTDIANLNIPTGIPLRYELDDDLKVLDSGYLDPAAAETAAAAVAA QGKKK
Sequences:
>Translated_245_residues MPTLVLLRHGESTWNRENLFTGWVDVDLSEKGLKEATRGGELLQEAGVLPDVVHTSLLTRAIRTAWLALDAAGRTWVPVR RSWRLNERHYGGLQGLNKAETLAKFGDEQFLLWRRSYDTPPPPIEPGQPSGVDERYADLAPDVIPLTECLRDVVVRMLPY WYDSIVPDLRSGATVLVTAHGNSLRALVKHLDGISDTDIANLNIPTGIPLRYELDDDLKVLDSGYLDPAAAETAAAAVAA QGKKK >Mature_244_residues PTLVLLRHGESTWNRENLFTGWVDVDLSEKGLKEATRGGELLQEAGVLPDVVHTSLLTRAIRTAWLALDAAGRTWVPVRR SWRLNERHYGGLQGLNKAETLAKFGDEQFLLWRRSYDTPPPPIEPGQPSGVDERYADLAPDVIPLTECLRDVVVRMLPYW YDSIVPDLRSGATVLVTAHGNSLRALVKHLDGISDTDIANLNIPTGIPLRYELDDDLKVLDSGYLDPAAAETAAAAVAAQ GKKK
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=248, Percent_Identity=52.8225806451613, Blast_Score=273, Evalue=7e-74, Organism=Homo sapiens, GI4505753, Length=248, Percent_Identity=55.241935483871, Blast_Score=255, Evalue=3e-68, Organism=Homo sapiens, GI71274132, Length=248, Percent_Identity=53.2258064516129, Blast_Score=242, Evalue=2e-64, Organism=Homo sapiens, GI4502445, Length=250, Percent_Identity=48, Blast_Score=242, Evalue=3e-64, Organism=Homo sapiens, GI40353764, Length=250, Percent_Identity=48, Blast_Score=242, Evalue=3e-64, Organism=Homo sapiens, GI310129614, Length=160, Percent_Identity=58.125, Blast_Score=171, Evalue=7e-43, Organism=Escherichia coli, GI1786970, Length=228, Percent_Identity=54.3859649122807, Blast_Score=255, Evalue=2e-69, Organism=Saccharomyces cerevisiae, GI6322697, Length=247, Percent_Identity=63.9676113360324, Blast_Score=301, Evalue=9e-83, Organism=Saccharomyces cerevisiae, GI6320183, Length=296, Percent_Identity=33.445945945946, Blast_Score=163, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6324516, Length=293, Percent_Identity=32.7645051194539, Blast_Score=156, Evalue=3e-39, Organism=Drosophila melanogaster, GI24646216, Length=249, Percent_Identity=52.2088353413655, Blast_Score=259, Evalue=2e-69, Organism=Drosophila melanogaster, GI85725270, Length=249, Percent_Identity=51.4056224899598, Blast_Score=235, Evalue=2e-62, Organism=Drosophila melanogaster, GI85725272, Length=249, Percent_Identity=51.4056224899598, Blast_Score=235, Evalue=2e-62, Organism=Drosophila melanogaster, GI24650981, Length=249, Percent_Identity=51.4056224899598, Blast_Score=235, Evalue=2e-62, Organism=Drosophila melanogaster, GI28571817, Length=217, Percent_Identity=40.5529953917051, Blast_Score=157, Evalue=6e-39, Organism=Drosophila melanogaster, GI28571815, Length=217, Percent_Identity=40.5529953917051, Blast_Score=157, Evalue=6e-39, Organism=Drosophila melanogaster, GI24648979, Length=217, Percent_Identity=40.5529953917051, Blast_Score=157, Evalue=7e-39,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 27026; Mature: 26895
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTLVLLRHGESTWNRENLFTGWVDVDLSEKGLKEATRGGELLQEAGVLPDVVHTSLLTR CCEEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AIRTAWLALDAAGRTWVPVRRSWRLNERHYGGLQGLNKAETLAKFGDEQFLLWRRSYDTP HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCC PPPIEPGQPSGVDERYADLAPDVIPLTECLRDVVVRMLPYWYDSIVPDLRSGATVLVTAH CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC GNSLRALVKHLDGISDTDIANLNIPTGIPLRYELDDDLKVLDSGYLDPAAAETAAAAVAA CCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHHHH QGKKK CCCCC >Mature Secondary Structure PTLVLLRHGESTWNRENLFTGWVDVDLSEKGLKEATRGGELLQEAGVLPDVVHTSLLTR CEEEEEECCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH AIRTAWLALDAAGRTWVPVRRSWRLNERHYGGLQGLNKAETLAKFGDEQFLLWRRSYDTP HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCC PPPIEPGQPSGVDERYADLAPDVIPLTECLRDVVVRMLPYWYDSIVPDLRSGATVLVTAH CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC GNSLRALVKHLDGISDTDIANLNIPTGIPLRYELDDDLKVLDSGYLDPAAAETAAAAVAA CCHHHHHHHHHCCCCCCCEEECCCCCCCCEEEECCCCHHHHHCCCCCCHHHHHHHHHHHH QGKKK CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA