| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is mug [H]
Identifier: 158317797
GI number: 158317797
Start: 7367721
End: 7368614
Strand: Direct
Name: mug [H]
Synonym: Franean1_6055
Alternate gene names: 158317797
Gene position: 7367721-7368614 (Clockwise)
Preceding gene: 158317761
Following gene: 158317806
Centisome position: 82.03
GC content: 72.04
Gene sequence:
>894_bases ATGGCCAGCACCAGACCGCCCAGCCAGGGCACCGCGCCGGACCAGCCGTCCCCGGCCGACCAGACACCAGAAGACACGCT GCCGCAGACACTCACCCTGTCGACGGGCCCCACGCTGCCATCAGAAGCTGCGACGCCGGGAATGGAAGCCGCGCCGGCGC AAGAAGCCGCCCCCGCGCAGGAAGCCACGGACAGGCCCGTAGCCGCCCCGGCACCGGAGGCCGCCGACACGCCTGTAGCC GGGCCGGCGGCGCTGAGGTCACCGAAGCCGCCGCGGCGGCCCCGACCGGACCGCGCGGAGCTTCTCGCGGCCTACGGGAA GACCGTTCCGGACCTCGTCGGTCCGGAGACCCGGGTGCTGCTGTGCGGTATCAATCCGTCCCTGGAGTCCGGCGCCACCG GATTCCATTTCGGGACGCCCAGCAATCGGCTCTGGCCGGTCCTGCACTTCGCCGGGTTCACCGGGCGCCGGCTGCATCCG TCCGAGACCGAGCACCTACGCGCCCGGGGCATCGGAATCACGAATCTGGTGCACCGCTCGACCGCTCGCGCCGATGAGAT CGCTGACGACGAAATCAGGGCCGGTGTGCCGGTACTCATCGAGCTTGTCGAACGGATCCGCCCGGAATGGGTCGCCTTTC TCGGGCTCGCCGCGTACCGCATCGGCTTCGGGCGGCGGACGGCGAAGGTCGGTCGACAGCCGGAGCGCATCGGTCCCGCC GGGGTGTGGCTGCTACCGAACCCCAGTGGGCTGAACGCGCACTACCAGCTACCCGACCTTGTCCGGGTCTACGGCGAACT GCGCGAGGCCGCCTTCGGGCCTGTCACGGCCACCACGCCGGCAGCGGGCCCGACCGCGGGTCCCGGACTCAGGTCCGGGC ACGGCGGCGGCTGA
Upstream 100 bases:
>100_bases CCGGCGCGGAGCGCCCTGATCTACGGCGGGCTGCCGCCAGCAATGGGATTCGGGTGGGGGTGGATGATTCGCAGGGGCGG CGACAAACGAGGATGCCAGG
Downstream 100 bases:
>100_bases CGGCGGCTGACGGCGGTCGGTGGCGCCGGCCGCCGCAAACGCCGAACGGCCCGGTGAACCGCGTACCTGCACGGTTCACC GGGCCGTCCCGGTCACAGAG
Product: uracil-DNA glycosylase superfamily protein
Products: NA
Alternate protein names: Double-strand-specific uracil glycosylase; Mismatch-specific uracil DNA-glycosylase; MUG [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MASTRPPSQGTAPDQPSPADQTPEDTLPQTLTLSTGPTLPSEAATPGMEAAPAQEAAPAQEATDRPVAAPAPEAADTPVA GPAALRSPKPPRRPRPDRAELLAAYGKTVPDLVGPETRVLLCGINPSLESGATGFHFGTPSNRLWPVLHFAGFTGRRLHP SETEHLRARGIGITNLVHRSTARADEIADDEIRAGVPVLIELVERIRPEWVAFLGLAAYRIGFGRRTAKVGRQPERIGPA GVWLLPNPSGLNAHYQLPDLVRVYGELREAAFGPVTATTPAAGPTAGPGLRSGHGGG
Sequences:
>Translated_297_residues MASTRPPSQGTAPDQPSPADQTPEDTLPQTLTLSTGPTLPSEAATPGMEAAPAQEAAPAQEATDRPVAAPAPEAADTPVA GPAALRSPKPPRRPRPDRAELLAAYGKTVPDLVGPETRVLLCGINPSLESGATGFHFGTPSNRLWPVLHFAGFTGRRLHP SETEHLRARGIGITNLVHRSTARADEIADDEIRAGVPVLIELVERIRPEWVAFLGLAAYRIGFGRRTAKVGRQPERIGPA GVWLLPNPSGLNAHYQLPDLVRVYGELREAAFGPVTATTPAAGPTAGPGLRSGHGGG >Mature_296_residues ASTRPPSQGTAPDQPSPADQTPEDTLPQTLTLSTGPTLPSEAATPGMEAAPAQEAAPAQEATDRPVAAPAPEAADTPVAG PAALRSPKPPRRPRPDRAELLAAYGKTVPDLVGPETRVLLCGINPSLESGATGFHFGTPSNRLWPVLHFAGFTGRRLHPS ETEHLRARGIGITNLVHRSTARADEIADDEIRAGVPVLIELVERIRPEWVAFLGLAAYRIGFGRRTAKVGRQPERIGPAG VWLLPNPSGLNAHYQLPDLVRVYGELREAAFGPVTATTPAAGPTAGPGLRSGHGGG
Specific function: Excises ethenocytosine and uracil, which can arise by alkylation or deamination of cytosine, respectively, from the corresponding mispairs with guanine in ds-DNA. It is capable of hydrolyzing the carbon-nitrogen bond between the sugar-phosphate backbone o
COG id: COG3663
COG function: function code L; G:T/U mismatch-specific DNA glycosylase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TDG/mug DNA glycosylase family [H]
Homologues:
Organism=Homo sapiens, GI59853162, Length=182, Percent_Identity=28.021978021978, Blast_Score=84, Evalue=2e-16, Organism=Escherichia coli, GI1789449, Length=163, Percent_Identity=46.0122699386503, Blast_Score=146, Evalue=1e-36, Organism=Drosophila melanogaster, GI21356805, Length=192, Percent_Identity=30.7291666666667, Blast_Score=94, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015637 - InterPro: IPR005122 [H]
Pfam domain/function: PF03167 UDG [H]
EC number: =3.2.2.28 [H]
Molecular weight: Translated: 31105; Mature: 30974
Theoretical pI: Translated: 7.24; Mature: 7.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTRPPSQGTAPDQPSPADQTPEDTLPQTLTLSTGPTLPSEAATPGMEAAPAQEAAPAQ CCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHCCCCCCCCCCHHCCCCH EATDRPVAAPAPEAADTPVAGPAALRSPKPPRRPRPDRAELLAAYGKTVPDLVGPETRVL HHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCEEE LCGINPSLESGATGFHFGTPSNRLWPVLHFAGFTGRRLHPSETEHLRARGIGITNLVHRS EECCCCCHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TARADEIADDEIRAGVPVLIELVERIRPEWVAFLGLAAYRIGFGRRTAKVGRQPERIGPA HHHHHHHCCHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC GVWLLPNPSGLNAHYQLPDLVRVYGELREAAFGPVTATTPAAGPTAGPGLRSGHGGG EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure ASTRPPSQGTAPDQPSPADQTPEDTLPQTLTLSTGPTLPSEAATPGMEAAPAQEAAPAQ CCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHCCCCCCCCCCHHCCCCH EATDRPVAAPAPEAADTPVAGPAALRSPKPPRRPRPDRAELLAAYGKTVPDLVGPETRVL HHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCEEE LCGINPSLESGATGFHFGTPSNRLWPVLHFAGFTGRRLHPSETEHLRARGIGITNLVHRS EECCCCCHHCCCCCEECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH TARADEIADDEIRAGVPVLIELVERIRPEWVAFLGLAAYRIGFGRRTAKVGRQPERIGPA HHHHHHHCCHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCC GVWLLPNPSGLNAHYQLPDLVRVYGELREAAFGPVTATTPAAGPTAGPGLRSGHGGG EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA