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The map label for this gene is sucC [H]

Identifier: 158317722

GI number: 158317722

Start: 7286403

End: 7287569

Strand: Reverse

Name: sucC [H]

Synonym: Franean1_5980

Alternate gene names: 158317722

Gene position: 7287569-7286403 (Counterclockwise)

Preceding gene: 158317723

Following gene: 158317721

Centisome position: 81.13

GC content: 68.04

Gene sequence:

>1167_bases
GTGGATCTCTTCGAATACCAGGCGAAGAAGCTTTTCGCCGAACATGGCGTACCGGTACCCACCGGGAAGATTGCCACAAC
CCCCCAACAGGCACGTGAGATCGCGACCGAGCTCGGCGGCAAGGTGGTCGTCAAGGCTCAGGTCAAGGCCGGAGGCCGAG
GCAAGGCCGGCGGCGTGAAGGTCGCCGACGGGCCCGACGACGCGTTCGAGAAGGCGTCGGCGATCCTGGGGATGGACATC
AAGGGCCACACGGTCCACTCCGTCCTCGTCGAGCAGGCCAGCAACATCGCGGAGGAGTACTACGCCTCCTTCCTGCTCGA
CCGGGCGAACCGCACGTTCCTCGCGATGGCCTCCCGTGAGGGCGGCATGGAGATCGAGGAGGTCGCGGCCACCAACCCGG
AGGCGCTCGCGCGCATCCACATCGACCCGCTGACCGGCGTGGACGCAGCCAAGGCCCGCGAGATCGCCGTCGCTGCCAAG
CTGCCCGAGGCCGCCATCGAGGGTGCGTCCGTGCTGCTGGTGAAGCTGTGGGAGGTGTTCGTCAAGGCCGACGCCACGCT
GGTCGAGGTGAACCCGCTCATCCTGACCGGCGACGGCAAGGTCATCGCGCTCGACGGCAAGGTGACCCTGGACGAGAACG
CGGATTTCCGGCACCCGGAGAACGCCGAGCTCGTCGACGTCGCCGCGGTCGACCCGCTGGAGCAGAAGGCCAAGGAGAAG
GGCCTCAACTACGTCAAGCTCGAGGGCCAGGTCGGGATCATCGGCAACGGTGCCGGCCTCGTCATGTCGACGCTGGACGT
CGTGACCTACGCCGGTGAGGAGTTCGGTGGCCAGCGGCCGGCGAACTTCCTCGACATCGGCGGTGGCGCCTCGGCCGAGG
TGATGGCGAACGGCCTGTCGATCATCCTGAGCGACCCGTCCGTGAAGAGCGTCTTCGTCAACATCTTCGGCGGGATCACG
GCCTGTGACGCCGTCGCGAACGGCATCGTCCAGGCGCTCGCCATCGTCGGGGACGTCAGCACCCCGCTGGTGGTGCGTCT
CGACGGCAACAACGCCGAGGAGGGCCGCCGGATCCTGAAGGAGGCCAACCTCCCGGTGGTCAAGCCGGTGGACACGATGG
ACGGCGCAGCGAAGCTCGCCGCCGAGCTCGCCGCGGCCGCGGCCTGA

Upstream 100 bases:

>100_bases
TCTGGGTCACCGGCCGGCGCCGAGCGTCCCAACGGCCTCGTCAGTAGGCTCGCAGGCGTTCTGTGCATCCCCTGACCGAC
CGCATCCGACTGGACGGACC

Downstream 100 bases:

>100_bases
CCTGGGTCGGAGGACACAACCGATGGCTATCTGGCTTGACGAGAACAGCCGCGTGGTGGTGCAGGGCATCACCGGTGGCG
AGGGCAGCAAGCACACCCGG

Product: succinyl-CoA synthetase subunit beta

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit beta; SCS-beta [H]

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MDLFEYQAKKLFAEHGVPVPTGKIATTPQQAREIATELGGKVVVKAQVKAGGRGKAGGVKVADGPDDAFEKASAILGMDI
KGHTVHSVLVEQASNIAEEYYASFLLDRANRTFLAMASREGGMEIEEVAATNPEALARIHIDPLTGVDAAKAREIAVAAK
LPEAAIEGASVLLVKLWEVFVKADATLVEVNPLILTGDGKVIALDGKVTLDENADFRHPENAELVDVAAVDPLEQKAKEK
GLNYVKLEGQVGIIGNGAGLVMSTLDVVTYAGEEFGGQRPANFLDIGGGASAEVMANGLSIILSDPSVKSVFVNIFGGIT
ACDAVANGIVQALAIVGDVSTPLVVRLDGNNAEEGRRILKEANLPVVKPVDTMDGAAKLAAELAAAAA

Sequences:

>Translated_388_residues
MDLFEYQAKKLFAEHGVPVPTGKIATTPQQAREIATELGGKVVVKAQVKAGGRGKAGGVKVADGPDDAFEKASAILGMDI
KGHTVHSVLVEQASNIAEEYYASFLLDRANRTFLAMASREGGMEIEEVAATNPEALARIHIDPLTGVDAAKAREIAVAAK
LPEAAIEGASVLLVKLWEVFVKADATLVEVNPLILTGDGKVIALDGKVTLDENADFRHPENAELVDVAAVDPLEQKAKEK
GLNYVKLEGQVGIIGNGAGLVMSTLDVVTYAGEEFGGQRPANFLDIGGGASAEVMANGLSIILSDPSVKSVFVNIFGGIT
ACDAVANGIVQALAIVGDVSTPLVVRLDGNNAEEGRRILKEANLPVVKPVDTMDGAAKLAAELAAAAA
>Mature_388_residues
MDLFEYQAKKLFAEHGVPVPTGKIATTPQQAREIATELGGKVVVKAQVKAGGRGKAGGVKVADGPDDAFEKASAILGMDI
KGHTVHSVLVEQASNIAEEYYASFLLDRANRTFLAMASREGGMEIEEVAATNPEALARIHIDPLTGVDAAKAREIAVAAK
LPEAAIEGASVLLVKLWEVFVKADATLVEVNPLILTGDGKVIALDGKVTLDENADFRHPENAELVDVAAVDPLEQKAKEK
GLNYVKLEGQVGIIGNGAGLVMSTLDVVTYAGEEFGGQRPANFLDIGGGASAEVMANGLSIILSDPSVKSVFVNIFGGIT
ACDAVANGIVQALAIVGDVSTPLVVRLDGNNAEEGRRILKEANLPVVKPVDTMDGAAKLAAELAAAAA

Specific function: Tricarboxylic acid cycle. [C]

COG id: COG0045

COG function: function code C; Succinyl-CoA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain [H]

Homologues:

Organism=Homo sapiens, GI11321583, Length=399, Percent_Identity=36.0902255639098, Blast_Score=256, Evalue=3e-68,
Organism=Homo sapiens, GI157779135, Length=389, Percent_Identity=36.2467866323907, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI294862256, Length=369, Percent_Identity=36.3143631436314, Blast_Score=228, Evalue=6e-60,
Organism=Escherichia coli, GI1786948, Length=389, Percent_Identity=44.7300771208226, Blast_Score=299, Evalue=2e-82,
Organism=Caenorhabditis elegans, GI17567829, Length=398, Percent_Identity=38.9447236180905, Blast_Score=257, Evalue=7e-69,
Organism=Caenorhabditis elegans, GI17539378, Length=400, Percent_Identity=34.5, Blast_Score=233, Evalue=9e-62,
Organism=Saccharomyces cerevisiae, GI6321683, Length=401, Percent_Identity=37.6558603491272, Blast_Score=246, Evalue=5e-66,
Organism=Drosophila melanogaster, GI161078106, Length=399, Percent_Identity=37.34335839599, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24645208, Length=399, Percent_Identity=37.34335839599, Blast_Score=237, Evalue=1e-62,
Organism=Drosophila melanogaster, GI281361397, Length=400, Percent_Identity=37.5, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI281361395, Length=400, Percent_Identity=37.5, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI21356231, Length=399, Percent_Identity=34.8370927318296, Blast_Score=224, Evalue=7e-59,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2361 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011761
- InterPro:   IPR013650
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR005811
- InterPro:   IPR017866
- InterPro:   IPR005809
- InterPro:   IPR016102 [H]

Pfam domain/function: PF08442 ATP-grasp_2; PF00549 Ligase_CoA [H]

EC number: =6.2.1.5 [H]

Molecular weight: Translated: 40291; Mature: 40291

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50975 ATP_GRASP ; PS01217 SUCCINYL_COA_LIG_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFEYQAKKLFAEHGVPVPTGKIATTPQQAREIATELGGKVVVKAQVKAGGRGKAGGVK
CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEE
VADGPDDAFEKASAILGMDIKGHTVHSVLVEQASNIAEEYYASFLLDRANRTFLAMASRE
ECCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
GGMEIEEVAATNPEALARIHIDPLTGVDAAKAREIAVAAKLPEAAIEGASVLLVKLWEVF
CCCCHHHHHCCCHHHEEEEEECCCCCCCCHHHHHEEEECCCCHHHHCCHHHHHHHHHHHH
VKADATLVEVNPLILTGDGKVIALDGKVTLDENADFRHPENAELVDVAAVDPLEQKAKEK
HHCCCEEEEECEEEEECCCEEEEECCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHC
GLNYVKLEGQVGIIGNGAGLVMSTLDVVTYAGEEFGGQRPANFLDIGGGASAEVMANGLS
CCCEEEECCEEEEEECCCHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCHHHHHCCCE
IILSDPSVKSVFVNIFGGITACDAVANGIVQALAIVGDVSTPLVVRLDGNNAEEGRRILK
EEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
EANLPVVKPVDTMDGAAKLAAELAAAAA
HCCCCEECCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MDLFEYQAKKLFAEHGVPVPTGKIATTPQQAREIATELGGKVVVKAQVKAGGRGKAGGVK
CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEE
VADGPDDAFEKASAILGMDIKGHTVHSVLVEQASNIAEEYYASFLLDRANRTFLAMASRE
ECCCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
GGMEIEEVAATNPEALARIHIDPLTGVDAAKAREIAVAAKLPEAAIEGASVLLVKLWEVF
CCCCHHHHHCCCHHHEEEEEECCCCCCCCHHHHHEEEECCCCHHHHCCHHHHHHHHHHHH
VKADATLVEVNPLILTGDGKVIALDGKVTLDENADFRHPENAELVDVAAVDPLEQKAKEK
HHCCCEEEEECEEEEECCCEEEEECCEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHC
GLNYVKLEGQVGIIGNGAGLVMSTLDVVTYAGEEFGGQRPANFLDIGGGASAEVMANGLS
CCCEEEECCEEEEEECCCHHHHHHHHHHHHCCHHHCCCCCCCEEECCCCCCHHHHHCCCE
IILSDPSVKSVFVNIFGGITACDAVANGIVQALAIVGDVSTPLVVRLDGNNAEEGRRILK
EEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
EANLPVVKPVDTMDGAAKLAAELAAAAA
HCCCCEECCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA