| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317718
Identifier: 158317718
GI number: 158317718
Start: 7282180
End: 7283598
Strand: Reverse
Name: 158317718
Synonym: Franean1_5976
Alternate gene names: NA
Gene position: 7283598-7282180 (Counterclockwise)
Preceding gene: 158317719
Following gene: 158317717
Centisome position: 81.09
GC content: 77.59
Gene sequence:
>1419_bases GTGCGAAACTCCGGCGCGTTCACCGGGGCTGTCCGCGGGCGTGAGCCCGCCGCGGACGCAGCCGGCACCGCCGCCGCCGA GCAGGCCGCCGGCGGGCCGCCGCGGGCCTGGCGGCGACTCGGCCGCCCGGTCGTCAGCGCCGTCACGACCAGCGCCGTGG GGCTGGTCGTCATCGAGCTCGTCGTGCTCGTCGTGTGGGGAACGGACACCAGCTCGTCCGCCGGCCCGGACACCGCGGCA CGGGTCGGCGCGGATCTGTGGCTGCTCGCGCACGGCGCCACCATCCACCTGCCCGGCGGGACCGTCGACTTCCTCCCGGT GGGGCTGGCGCTGCTTCCCCTTCTCGCGGCGACGACCGCCGCGCACCGCCTGGCGGCCGGCAATCTCGAACGGCTGCCGC CCGTGCGGGGCCTGCGCCCGCCCGGCCTGCGTCCGTCGAGCCTGCGCCCGGGCCGGTCAGCGCGGGCCGGGACACCGCCG CCCTGGCGAGCGCTGGGCCGCGATGTCGCACTCGTCGCCGTCACCCAGACGGTCTTCGTCCTGCTGGTCGCGCTCGTCGT GTCGGCGCCGGCCGCGCGCCCGGATCTGCTCACCGTCGTCGTTGGCGCGCTGTCGTTCAGCGTGACCGGCGCGTCGGTCG GAGCCCTCTCCGGCTACGGCGCGCTGCGGTCGGTCTGGCGTGCCCTGCCCGGCATGGTCAGGGTGCCCGTCGCGGCCGCG TTCACCTCGTTCACCGCGCTGCTGGGCGCGTCCGCCTTCGGGGTCGCGCTGGTCCTGGCCGCGACCCTGCCCGAGATCGC CGCGGCCGACCGCGGCCTGGGCACCGGCGTGGTCGGCGGCGTCGGGCTGGCCGCCGTCCAGCTCGCGGTGCTTCCCAACC TGGTCATCTGGGCGCTGGCGTACACACTCGGCCCGGGTTTCGGCGCCGGCGGCGGCTTCGTCCGGCCGGACGCGGTGCAC CCGGCGATGCTGCCTGACCTGCCGGTCTTCGCCGCGCTGCCGCCCGGCCCGCTGCCCCGGCCCGGCTGGCTCGTGCTGGC GCTGGTGCCCGTCGTCGCCGGGATCATGCTCGCGGTGTCGGTGCGCCGCTGCGCCGGGCAGGTCAGCCACAGGCGCCGGC TGGCGGCGGTGCTTGCCGCGGCGGGGCTCGGCGGGGTGCTGATGATGCTCGCCGCGCACCTGTCGGCCGGCCGGCTGGGC GACGCGTCCGGCCGTTTCGGGCCGACGGGATGGTCGGTGGGGCTGGCGGCCGCGGGAGAGCTGGCCGTGGTGGGCGTCGT GGTGTGCTGCCTGGCCGAGATGGTGGCGCGGCGTGCCGGTCAGCCGTTCGAGGTCGGCTCGGTGCGCAGCGCTTCGCTGA AGCGGCGGCTGCACTCGTCGAGCGCCTGGGGCGACCGGGCCTCGCGCCGGCATTCCTGA
Upstream 100 bases:
>100_bases GCGTGTCCTGTTACCGACCTGGGTCGTTCTCGTATATCTCGGCGTGTTGTCCCGGAAGTGGTCCTCCGTCCGTGCGAGCC TGCCGGGCGTGGGTGCTCCC
Downstream 100 bases:
>100_bases TAGCGGTGCAGGTCGTCGCCGTGCCGTTCGTAGAAGGCCCACGTCCCGCCGGCGACGGTGACCGCGACCAGCAGTGAGAG GGCGCCGAGCGCCAGCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MRNSGAFTGAVRGREPAADAAGTAAAEQAAGGPPRAWRRLGRPVVSAVTTSAVGLVVIELVVLVVWGTDTSSSAGPDTAA RVGADLWLLAHGATIHLPGGTVDFLPVGLALLPLLAATTAAHRLAAGNLERLPPVRGLRPPGLRPSSLRPGRSARAGTPP PWRALGRDVALVAVTQTVFVLLVALVVSAPAARPDLLTVVVGALSFSVTGASVGALSGYGALRSVWRALPGMVRVPVAAA FTSFTALLGASAFGVALVLAATLPEIAAADRGLGTGVVGGVGLAAVQLAVLPNLVIWALAYTLGPGFGAGGGFVRPDAVH PAMLPDLPVFAALPPGPLPRPGWLVLALVPVVAGIMLAVSVRRCAGQVSHRRRLAAVLAAAGLGGVLMMLAAHLSAGRLG DASGRFGPTGWSVGLAAAGELAVVGVVVCCLAEMVARRAGQPFEVGSVRSASLKRRLHSSSAWGDRASRRHS
Sequences:
>Translated_472_residues MRNSGAFTGAVRGREPAADAAGTAAAEQAAGGPPRAWRRLGRPVVSAVTTSAVGLVVIELVVLVVWGTDTSSSAGPDTAA RVGADLWLLAHGATIHLPGGTVDFLPVGLALLPLLAATTAAHRLAAGNLERLPPVRGLRPPGLRPSSLRPGRSARAGTPP PWRALGRDVALVAVTQTVFVLLVALVVSAPAARPDLLTVVVGALSFSVTGASVGALSGYGALRSVWRALPGMVRVPVAAA FTSFTALLGASAFGVALVLAATLPEIAAADRGLGTGVVGGVGLAAVQLAVLPNLVIWALAYTLGPGFGAGGGFVRPDAVH PAMLPDLPVFAALPPGPLPRPGWLVLALVPVVAGIMLAVSVRRCAGQVSHRRRLAAVLAAAGLGGVLMMLAAHLSAGRLG DASGRFGPTGWSVGLAAAGELAVVGVVVCCLAEMVARRAGQPFEVGSVRSASLKRRLHSSSAWGDRASRRHS >Mature_472_residues MRNSGAFTGAVRGREPAADAAGTAAAEQAAGGPPRAWRRLGRPVVSAVTTSAVGLVVIELVVLVVWGTDTSSSAGPDTAA RVGADLWLLAHGATIHLPGGTVDFLPVGLALLPLLAATTAAHRLAAGNLERLPPVRGLRPPGLRPSSLRPGRSARAGTPP PWRALGRDVALVAVTQTVFVLLVALVVSAPAARPDLLTVVVGALSFSVTGASVGALSGYGALRSVWRALPGMVRVPVAAA FTSFTALLGASAFGVALVLAATLPEIAAADRGLGTGVVGGVGLAAVQLAVLPNLVIWALAYTLGPGFGAGGGFVRPDAVH PAMLPDLPVFAALPPGPLPRPGWLVLALVPVVAGIMLAVSVRRCAGQVSHRRRLAAVLAAAGLGGVLMMLAAHLSAGRLG DASGRFGPTGWSVGLAAAGELAVVGVVVCCLAEMVARRAGQPFEVGSVRSASLKRRLHSSSAWGDRASRRHS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47438; Mature: 47438
Theoretical pI: Translated: 12.23; Mature: 12.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNSGAFTGAVRGREPAADAAGTAAAEQAAGGPPRAWRRLGRPVVSAVTTSAVGLVVIEL CCCCCCCEECCCCCCCCCHHHCHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH VVLVVWGTDTSSSAGPDTAARVGADLWLLAHGATIHLPGGTVDFLPVGLALLPLLAATTA HHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHH AHRLAAGNLERLPPVRGLRPPGLRPSSLRPGRSARAGTPPPWRALGRDVALVAVTQTVFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH LLVALVVSAPAARPDLLTVVVGALSFSVTGASVGALSGYGALRSVWRALPGMVRVPVAAA HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FTSFTALLGASAFGVALVLAATLPEIAAADRGLGTGVVGGVGLAAVQLAVLPNLVIWALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YTLGPGFGAGGGFVRPDAVHPAMLPDLPVFAALPPGPLPRPGWLVLALVPVVAGIMLAVS HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH VRRCAGQVSHRRRLAAVLAAAGLGGVLMMLAAHLSAGRLGDASGRFGPTGWSVGLAAAGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCH LAVVGVVVCCLAEMVARRAGQPFEVGSVRSASLKRRLHSSSAWGDRASRRHS HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCC >Mature Secondary Structure MRNSGAFTGAVRGREPAADAAGTAAAEQAAGGPPRAWRRLGRPVVSAVTTSAVGLVVIEL CCCCCCCEECCCCCCCCCHHHCHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHH VVLVVWGTDTSSSAGPDTAARVGADLWLLAHGATIHLPGGTVDFLPVGLALLPLLAATTA HHHHHCCCCCCCCCCCCHHHHHCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHH AHRLAAGNLERLPPVRGLRPPGLRPSSLRPGRSARAGTPPPWRALGRDVALVAVTQTVFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHH LLVALVVSAPAARPDLLTVVVGALSFSVTGASVGALSGYGALRSVWRALPGMVRVPVAAA HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH FTSFTALLGASAFGVALVLAATLPEIAAADRGLGTGVVGGVGLAAVQLAVLPNLVIWALA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH YTLGPGFGAGGGFVRPDAVHPAMLPDLPVFAALPPGPLPRPGWLVLALVPVVAGIMLAVS HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH VRRCAGQVSHRRRLAAVLAAAGLGGVLMMLAAHLSAGRLGDASGRFGPTGWSVGLAAAGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCH LAVVGVVVCCLAEMVARRAGQPFEVGSVRSASLKRRLHSSSAWGDRASRRHS HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA