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The map label for this gene is deoC [H]

Identifier: 158317663

GI number: 158317663

Start: 7191508

End: 7192278

Strand: Reverse

Name: deoC [H]

Synonym: Franean1_5921

Alternate gene names: 158317663

Gene position: 7192278-7191508 (Counterclockwise)

Preceding gene: 158317665

Following gene: 158317661

Centisome position: 80.07

GC content: 73.41

Gene sequence:

>771_bases
ATGATGCAAGGTATGACAACGGCTCCCGCCGGACCCGACCGTCCCGCGCCGGGCGCCGACTCCGACGCCGCCGGGCGTCG
GGTCGCGCCCCGCCGCGCCGAGCTCGCGCGCATGATCGACCACACCCTGCTGCGCCCCGAGGCGACCGGCGAGGAGATCG
TCAACCTCTGCGCGGACGCGGCGAAACTCGGCGTCGGCACCGTCTGCGTCGCCCCGACCCACGTCTTCCTCGCCGCCGCC
AGCGCCCGCCAGGCCGGCAAGGACGCCGATCCGTCGTTCGCGGTCGCCTCGGTCGTCGGCTTCCCGCACGGGACACACCT
CACGGTGATCAAGGCCGAGGAGGCCCGGCGCGCGGTGGCCGACGGCGCGACCGAGATCGACATGGTCGTCGACATCGCGA
ACATCATGGATGAGAACTGGCGCGCCATCGAGACCGAGATCACCGAGGTGCGACTGTCCGTCCCGCCGCACGTGATCCTC
AAAGTGATCCTCGAGACGGCCCTGCTCCCGGACGAGAGCATCGCGGCGGCCTGCCGAGCCGCGGAGGACGGCGGCGCCGA
GTTCGTGAAGACCTCGACCGGCTTCAGCCCGGCCGGCGGCGCCTCGCTGCGCGCGGTGCGGGCAATGGTCGCCGCGGTCG
GCGGCCGGCTGGGCGTCAAGGCCTCTGGCGGCATCCGCACCGCCGACCAGGCCCTGGCCTTCGTCGACGCCGGCGCCACC
CGCCTGGGCCTCTCCGCGACCAAGGACATCCTCGCCGACATCCCGGCCTGA

Upstream 100 bases:

>100_bases
AGGACGGTGAGCGCGGTCGCTGCCAGCGGATGATCGACGACCTGAACCTGCACGGTTGGCTCCTACCGGGACACTCGAGA
ACCCACACTGCGCATGGGCG

Downstream 100 bases:

>100_bases
CCCCGCCGTCGGCCCGCCACCGGCCCGCCGCCGGGCGGCGCTCGCCCGGGGCGGGGCTCGTCCGGAGCTAGTCCTCGGAG
ATGGTGAAGACGGGCGGGAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MMQGMTTAPAGPDRPAPGADSDAAGRRVAPRRAELARMIDHTLLRPEATGEEIVNLCADAAKLGVGTVCVAPTHVFLAAA
SARQAGKDADPSFAVASVVGFPHGTHLTVIKAEEARRAVADGATEIDMVVDIANIMDENWRAIETEITEVRLSVPPHVIL
KVILETALLPDESIAAACRAAEDGGAEFVKTSTGFSPAGGASLRAVRAMVAAVGGRLGVKASGGIRTADQALAFVDAGAT
RLGLSATKDILADIPA

Sequences:

>Translated_256_residues
MMQGMTTAPAGPDRPAPGADSDAAGRRVAPRRAELARMIDHTLLRPEATGEEIVNLCADAAKLGVGTVCVAPTHVFLAAA
SARQAGKDADPSFAVASVVGFPHGTHLTVIKAEEARRAVADGATEIDMVVDIANIMDENWRAIETEITEVRLSVPPHVIL
KVILETALLPDESIAAACRAAEDGGAEFVKTSTGFSPAGGASLRAVRAMVAAVGGRLGVKASGGIRTADQALAFVDAGAT
RLGLSATKDILADIPA
>Mature_256_residues
MMQGMTTAPAGPDRPAPGADSDAAGRRVAPRRAELARMIDHTLLRPEATGEEIVNLCADAAKLGVGTVCVAPTHVFLAAA
SARQAGKDADPSFAVASVVGFPHGTHLTVIKAEEARRAVADGATEIDMVVDIANIMDENWRAIETEITEVRLSVPPHVIL
KVILETALLPDESIAAACRAAEDGGAEFVKTSTGFSPAGGASLRAVRAMVAAVGGRLGVKASGGIRTADQALAFVDAGAT
RLGLSATKDILADIPA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=232, Percent_Identity=35.3448275862069, Blast_Score=89, Evalue=4e-18,
Organism=Escherichia coli, GI1790841, Length=209, Percent_Identity=32.0574162679426, Blast_Score=85, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=256, Percent_Identity=30.46875, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI19922098, Length=185, Percent_Identity=29.1891891891892, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26204; Mature: 26204

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQGMTTAPAGPDRPAPGADSDAAGRRVAPRRAELARMIDHTLLRPEATGEEIVNLCADA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AKLGVGTVCVAPTHVFLAAASARQAGKDADPSFAVASVVGFPHGTHLTVIKAEEARRAVA
HHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHH
DGATEIDMVVDIANIMDENWRAIETEITEVRLSVPPHVILKVILETALLPDESIAAACRA
CCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH
AEDGGAEFVKTSTGFSPAGGASLRAVRAMVAAVGGRLGVKASGGIRTADQALAFVDAGAT
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCH
RLGLSATKDILADIPA
HHCHHHHHHHHHCCCC
>Mature Secondary Structure
MMQGMTTAPAGPDRPAPGADSDAAGRRVAPRRAELARMIDHTLLRPEATGEEIVNLCADA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AKLGVGTVCVAPTHVFLAAASARQAGKDADPSFAVASVVGFPHGTHLTVIKAEEARRAVA
HHHCCCEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEEHHHHHHHHH
DGATEIDMVVDIANIMDENWRAIETEITEVRLSVPPHVILKVILETALLPDESIAAACRA
CCCCHHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH
AEDGGAEFVKTSTGFSPAGGASLRAVRAMVAAVGGRLGVKASGGIRTADQALAFVDAGAT
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHCCCH
RLGLSATKDILADIPA
HHCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA