| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317639
Identifier: 158317639
GI number: 158317639
Start: 7161416
End: 7163059
Strand: Reverse
Name: 158317639
Synonym: Franean1_5897
Alternate gene names: NA
Gene position: 7163059-7161416 (Counterclockwise)
Preceding gene: 158317640
Following gene: 158317638
Centisome position: 79.75
GC content: 75.55
Gene sequence:
>1644_bases ATGGCGAGCTCATCGGGCCCGCCGCCCGTCCTGGGCACGCCACCCTCCCAGGCCGGGCCGGCGGCGGGAAACCTACCGCT ACAGCCCGACCCTGCCCAGCCTGATCGTCACAATTCGCGACCTCATCGTGAGGATCGGTGGCGCGCGGATCGGCCGTCCG CCGCGCCGCGCCGCTGGGGCTTCGTGCGGCGCCATGCCGCCTTCCTGATCCTGCTCACGCTGGCCGTCGGGGCCCGGGCC GCCGTCCTGCTGGCCTATCGGCCCGCGCTCTTCTACTACGGCGACTCGCCCGCCTACCTCGACCAGGCCACCAACCGGCT GTGGGCGGGCGACTGGCGGCCGTCGGGCTACCCGATGTTCCTGCGGGTCATCGGCGCCCCCGACCACCTGACCCGGCTGG TGGTCGTGCAGCACACGGCGGCCCTGCTGGCCGGGGTCGCCCTCTACGCGGCGTCGCGTCAGCTGTTCGAGCGGCACGGT CCCGTCGCGGCGGCCGGCCGCACCGGGGGCTGGCCGGCCGCGGTGGTCGCGGCGCCGGCGCTGCTGGCCCCCTGGGTGCT CGACCTCGGCCAGTTCGTCCTGGCCGACAGCCTGTTCGGGACGCTCGTCCTCGGCGGGCTCGTGCTGCTGGCCTGGCCCG GGCGGCCGGCCGCGTGGCGCTTCGCCGTCGCCGGGCTGCTGCTCGGCGCCAGCCTCACCGTCCGCACGGTCGGCTACGGC CCGCTCGCGGTGGGCGCGGCCGGTGCCGTCGTCCTGGCTGTCACGCACTGGCGGCGGGCCCACGCGGCGGTCGTGGCGGC GGGGGCCGTGCTCGCGTTCGTCCTGGGAGCGGCCGTCCCGGTCGTCGCGTACTCGGCGTGGAGCGCGGGGCAGGGGAAGG GCTTCACCGTCACCGCGCACTCGGGGTTCTTCCTGTACGGCCGGGTCGCCCCGTTCGCCGACTGCGCCCGCCTGCCCGAC GATCCCGACCTGCTGTCGCTGTGCGACCCGCGCCCGGTCGGCGAGCACGGCTCCCCGGTGACCTACCTCTGGCCGGACGA CTCGCCGCTGCGCCAGGGCAACGACCTGGTCCCACCGGGCCGCGAGGAGCTCGCCGGCGAGTTCGCCCGGCACGTGATCC GTGAGCAGCCCTGGACGATGGTCACCTCGACCGCCCGCTACCTGGCCGGGTACTTCTCGCCCGTCCCGTACGAGAACAGG CTCACGAGCCGCGCCGACACCTGGGAGCTGCCCCGGACGGGCACCAACCGCCTCGTCTCGGACGGCCCGCACGCCGCCGA CGGGTACTTCTCCGTCGCGCGGCTGAACGACCCCCCGGTCGAGCTGCTCGCCTTCTATTCCCGGCTCGGCTACGGGCCGA TGCCCCTGGTCGGCCTGGGTCTGCTCGCCGGGCTGCTGGCTCAGATCGTCGGGCGGGTGCGCGGGCGCGCCGGCCCCGGT CGGCTGTTCTGGCTGCTCGGGGGAGCAAGCCTGTCCACCCTGCTCCTGAGCTCCCTGACCTCGGCGTTCGATTACCGCTA CCTGGGATCGGTCGTCGGCCTGCTCGCCCCGGCCGCGCTGCTCGGCGCGGCCGGGCTGGCACGGGTGCTTCGACCGCGGC CGGTCGGCCGCGGCGGGAGCGTCAACGAGGGAGGTATCGCGTGA
Upstream 100 bases:
>100_bases GCTGGACAAGGCCTCGCTGGACGCCGACGCCTGACCTGGGCGGCCGCCGTGCCGGGGGCGCCGCCGAACGTGTCGGACCG GCCTGGGAGACTGTGGCGCA
Downstream 100 bases:
>100_bases AGGTCGCGTTTCTCGGCCTGGGCCGGATGGGCGTCCGGATGGCCCACCACATCCTGGCCGCCGGGCACGAGCTGGCCGTC TGGAACAGGACACCCGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MASSSGPPPVLGTPPSQAGPAAGNLPLQPDPAQPDRHNSRPHREDRWRADRPSAAPRRWGFVRRHAAFLILLTLAVGARA AVLLAYRPALFYYGDSPAYLDQATNRLWAGDWRPSGYPMFLRVIGAPDHLTRLVVVQHTAALLAGVALYAASRQLFERHG PVAAAGRTGGWPAAVVAAPALLAPWVLDLGQFVLADSLFGTLVLGGLVLLAWPGRPAAWRFAVAGLLLGASLTVRTVGYG PLAVGAAGAVVLAVTHWRRAHAAVVAAGAVLAFVLGAAVPVVAYSAWSAGQGKGFTVTAHSGFFLYGRVAPFADCARLPD DPDLLSLCDPRPVGEHGSPVTYLWPDDSPLRQGNDLVPPGREELAGEFARHVIREQPWTMVTSTARYLAGYFSPVPYENR LTSRADTWELPRTGTNRLVSDGPHAADGYFSVARLNDPPVELLAFYSRLGYGPMPLVGLGLLAGLLAQIVGRVRGRAGPG RLFWLLGGASLSTLLLSSLTSAFDYRYLGSVVGLLAPAALLGAAGLARVLRPRPVGRGGSVNEGGIA
Sequences:
>Translated_547_residues MASSSGPPPVLGTPPSQAGPAAGNLPLQPDPAQPDRHNSRPHREDRWRADRPSAAPRRWGFVRRHAAFLILLTLAVGARA AVLLAYRPALFYYGDSPAYLDQATNRLWAGDWRPSGYPMFLRVIGAPDHLTRLVVVQHTAALLAGVALYAASRQLFERHG PVAAAGRTGGWPAAVVAAPALLAPWVLDLGQFVLADSLFGTLVLGGLVLLAWPGRPAAWRFAVAGLLLGASLTVRTVGYG PLAVGAAGAVVLAVTHWRRAHAAVVAAGAVLAFVLGAAVPVVAYSAWSAGQGKGFTVTAHSGFFLYGRVAPFADCARLPD DPDLLSLCDPRPVGEHGSPVTYLWPDDSPLRQGNDLVPPGREELAGEFARHVIREQPWTMVTSTARYLAGYFSPVPYENR LTSRADTWELPRTGTNRLVSDGPHAADGYFSVARLNDPPVELLAFYSRLGYGPMPLVGLGLLAGLLAQIVGRVRGRAGPG RLFWLLGGASLSTLLLSSLTSAFDYRYLGSVVGLLAPAALLGAAGLARVLRPRPVGRGGSVNEGGIA >Mature_546_residues ASSSGPPPVLGTPPSQAGPAAGNLPLQPDPAQPDRHNSRPHREDRWRADRPSAAPRRWGFVRRHAAFLILLTLAVGARAA VLLAYRPALFYYGDSPAYLDQATNRLWAGDWRPSGYPMFLRVIGAPDHLTRLVVVQHTAALLAGVALYAASRQLFERHGP VAAAGRTGGWPAAVVAAPALLAPWVLDLGQFVLADSLFGTLVLGGLVLLAWPGRPAAWRFAVAGLLLGASLTVRTVGYGP LAVGAAGAVVLAVTHWRRAHAAVVAAGAVLAFVLGAAVPVVAYSAWSAGQGKGFTVTAHSGFFLYGRVAPFADCARLPDD PDLLSLCDPRPVGEHGSPVTYLWPDDSPLRQGNDLVPPGREELAGEFARHVIREQPWTMVTSTARYLAGYFSPVPYENRL TSRADTWELPRTGTNRLVSDGPHAADGYFSVARLNDPPVELLAFYSRLGYGPMPLVGLGLLAGLLAQIVGRVRGRAGPGR LFWLLGGASLSTLLLSSLTSAFDYRYLGSVVGLLAPAALLGAAGLARVLRPRPVGRGGSVNEGGIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57721; Mature: 57590
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSSGPPPVLGTPPSQAGPAAGNLPLQPDPAQPDRHNSRPHREDRWRADRPSAAPRRWG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHH FVRRHAAFLILLTLAVGARAAVLLAYRPALFYYGDSPAYLDQATNRLWAGDWRPSGYPMF HHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCHHHHHHHCCEECCCCCCCCCCEE LRVIGAPDHLTRLVVVQHTAALLAGVALYAASRQLFERHGPVAAAGRTGGWPAAVVAAPA EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH LLAPWVLDLGQFVLADSLFGTLVLGGLVLLAWPGRPAAWRFAVAGLLLGASLTVRTVGYG HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC PLAVGAAGAVVLAVTHWRRAHAAVVAAGAVLAFVLGAAVPVVAYSAWSAGQGKGFTVTAH CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC SGFFLYGRVAPFADCARLPDDPDLLSLCDPRPVGEHGSPVTYLWPDDSPLRQGNDLVPPG CCEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCC REELAGEFARHVIREQPWTMVTSTARYLAGYFSPVPYENRLTSRADTWELPRTGTNRLVS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCC DGPHAADGYFSVARLNDPPVELLAFYSRLGYGPMPLVGLGLLAGLLAQIVGRVRGRAGPG CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC RLFWLLGGASLSTLLLSSLTSAFDYRYLGSVVGLLAPAALLGAAGLARVLRPRPVGRGGS EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VNEGGIA CCCCCCC >Mature Secondary Structure ASSSGPPPVLGTPPSQAGPAAGNLPLQPDPAQPDRHNSRPHREDRWRADRPSAAPRRWG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHH FVRRHAAFLILLTLAVGARAAVLLAYRPALFYYGDSPAYLDQATNRLWAGDWRPSGYPMF HHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEECCCCHHHHHHHCCEECCCCCCCCCCEE LRVIGAPDHLTRLVVVQHTAALLAGVALYAASRQLFERHGPVAAAGRTGGWPAAVVAAPA EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHH LLAPWVLDLGQFVLADSLFGTLVLGGLVLLAWPGRPAAWRFAVAGLLLGASLTVRTVGYG HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCCCEEEEEECCC PLAVGAAGAVVLAVTHWRRAHAAVVAAGAVLAFVLGAAVPVVAYSAWSAGQGKGFTVTAH CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC SGFFLYGRVAPFADCARLPDDPDLLSLCDPRPVGEHGSPVTYLWPDDSPLRQGNDLVPPG CCEEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCC REELAGEFARHVIREQPWTMVTSTARYLAGYFSPVPYENRLTSRADTWELPRTGTNRLVS HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCC DGPHAADGYFSVARLNDPPVELLAFYSRLGYGPMPLVGLGLLAGLLAQIVGRVRGRAGPG CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC RLFWLLGGASLSTLLLSSLTSAFDYRYLGSVVGLLAPAALLGAAGLARVLRPRPVGRGGS EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VNEGGIA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA