| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is vdlC [H]
Identifier: 158317554
GI number: 158317554
Start: 7052556
End: 7053392
Strand: Reverse
Name: vdlC [H]
Synonym: Franean1_5810
Alternate gene names: 158317554
Gene position: 7053392-7052556 (Counterclockwise)
Preceding gene: 158317560
Following gene: 158317551
Centisome position: 78.53
GC content: 67.74
Gene sequence:
>837_bases ATGATCAAGAAGGTAGCTCTGGTCACCGGCGCCTCCTCCGGCATAGGCGAGGCCACCGCCCGGCAACTCCATGAGGCCGG CTTCATCGTTTACGGCGCTGCTCGCCGAGCCGACCGGATGACGGCGCTGGCGGCCTCGGGCGTACGTACGCTCTCGCTCG ACGTCACCGATGAGACTTCGGCCAAGAACGCGGTCGCAGAGATCCTCGCCGCCGAAGGCCGCATCGACGTTCTTGTCAAC AACGCCGGGTACGGCTCATACGGCGCGCTGGAAGACGTCCCGATGCGCGAGGCCCGCGCGCAGATCGAGGTCAACCTGTT CGGTCTGGCCCATCTGACTCAGCTGGTGCTGCCAGCCATGCGTGCCCAGCGCAGTGGCACCATCATCAACATCAGCTCCA TGGGTGGACGGTTCGCCACACCCATGGGTGCGTGGTACCACGCCAGTAAGTACGCCGTCGAAGGACTCAGCGACGCGTTG CGCCTGGAGCTCAAGCGGTTCGGCATCGCTGTCCTGCTCATCGAGCCGGGCTCGATCCGGACCGAGTGGGGCGCGATCGC TGCCGAGAAGCTACGCACCACCTCCGGCCAGGGGCCGTACGCCGAGCAGGCGAACGCCATGGCCGCGTCGCTGGAGTCCA GCTCACGCCCTGACGCGCGGATGACCTCACCGACCAGCGTCATCGCCAAAGCCGTCACCAGGGCGGCCACCGCCCGCCGA CCCCGTACCCGCTACCGTGTCGGCTTCGGTGCCCGCCCGCTCATCCTCCTCAGCAGGATCCTGCCCGACCGGACCTTCGA CGCCCTGGTCAAGCGCTCCTCCGGCGTTCCGGCCTGA
Upstream 100 bases:
>100_bases TAGATGCTTCCCGGCTCGTTGGGCGTCGGTCAGTACCTGCTCGGGCAGCGCCCCCGGCCTGGCCGGAGCGCGGCACCACG GCACCGCGAAAGGAACTGAC
Downstream 100 bases:
>100_bases ACCGCCACCGCGGCCACTCCCGCCTGTCGAGCCCGGTTATCGCCTCATCGTCACCAACGGCATGGCCGACAACTGCGAGA TCAACGGTCTACGGGTTCGC
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MIKKVALVTGASSGIGEATARQLHEAGFIVYGAARRADRMTALAASGVRTLSLDVTDETSAKNAVAEILAAEGRIDVLVN NAGYGSYGALEDVPMREARAQIEVNLFGLAHLTQLVLPAMRAQRSGTIINISSMGGRFATPMGAWYHASKYAVEGLSDAL RLELKRFGIAVLLIEPGSIRTEWGAIAAEKLRTTSGQGPYAEQANAMAASLESSSRPDARMTSPTSVIAKAVTRAATARR PRTRYRVGFGARPLILLSRILPDRTFDALVKRSSGVPA
Sequences:
>Translated_278_residues MIKKVALVTGASSGIGEATARQLHEAGFIVYGAARRADRMTALAASGVRTLSLDVTDETSAKNAVAEILAAEGRIDVLVN NAGYGSYGALEDVPMREARAQIEVNLFGLAHLTQLVLPAMRAQRSGTIINISSMGGRFATPMGAWYHASKYAVEGLSDAL RLELKRFGIAVLLIEPGSIRTEWGAIAAEKLRTTSGQGPYAEQANAMAASLESSSRPDARMTSPTSVIAKAVTRAATARR PRTRYRVGFGARPLILLSRILPDRTFDALVKRSSGVPA >Mature_278_residues MIKKVALVTGASSGIGEATARQLHEAGFIVYGAARRADRMTALAASGVRTLSLDVTDETSAKNAVAEILAAEGRIDVLVN NAGYGSYGALEDVPMREARAQIEVNLFGLAHLTQLVLPAMRAQRSGTIINISSMGGRFATPMGAWYHASKYAVEGLSDAL RLELKRFGIAVLLIEPGSIRTEWGAIAAEKLRTTSGQGPYAEQANAMAASLESSSRPDARMTSPTSVIAKAVTRAATARR PRTRYRVGFGARPLILLSRILPDRTFDALVKRSSGVPA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI44680136, Length=270, Percent_Identity=30.7407407407407, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI44680133, Length=270, Percent_Identity=30.7407407407407, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI17738292, Length=270, Percent_Identity=30.7407407407407, Blast_Score=118, Evalue=7e-27, Organism=Homo sapiens, GI40548397, Length=261, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI214010158, Length=261, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI214010156, Length=261, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI22758144, Length=261, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI19743808, Length=296, Percent_Identity=31.4189189189189, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI20149619, Length=213, Percent_Identity=35.2112676056338, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI150247226, Length=291, Percent_Identity=31.9587628865979, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI7706318, Length=219, Percent_Identity=34.703196347032, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI50726952, Length=277, Percent_Identity=32.129963898917, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=34.7368421052632, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI223718074, Length=195, Percent_Identity=36.9230769230769, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI22507405, Length=296, Percent_Identity=30.0675675675676, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI4504503, Length=300, Percent_Identity=30, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI157739938, Length=292, Percent_Identity=26.3698630136986, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI119392083, Length=282, Percent_Identity=28.3687943262411, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI4503817, Length=183, Percent_Identity=28.9617486338798, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=31.4432989690722, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI59889578, Length=191, Percent_Identity=34.5549738219895, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI7705855, Length=194, Percent_Identity=29.8969072164948, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=32.6315789473684, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=32.6315789473684, Blast_Score=75, Evalue=8e-14, Organism=Homo sapiens, GI40254992, Length=219, Percent_Identity=29.6803652968037, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=29.7872340425532, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI19923817, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI4557649, Length=184, Percent_Identity=29.8913043478261, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI7705925, Length=181, Percent_Identity=28.7292817679558, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1786701, Length=272, Percent_Identity=33.0882352941176, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=36.4130434782609, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787335, Length=183, Percent_Identity=38.2513661202186, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=33.879781420765, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=186, Percent_Identity=33.8709677419355, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=32.0855614973262, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786812, Length=197, Percent_Identity=33.502538071066, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=32.6315789473684, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787905, Length=186, Percent_Identity=31.7204301075269, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367175, Length=201, Percent_Identity=30.3482587064677, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534660, Length=299, Percent_Identity=26.4214046822742, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71997402, Length=196, Percent_Identity=34.1836734693878, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17570069, Length=191, Percent_Identity=32.9842931937173, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17557780, Length=304, Percent_Identity=26.6447368421053, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI32563809, Length=283, Percent_Identity=25.4416961130742, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17507613, Length=283, Percent_Identity=25.4416961130742, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=198, Percent_Identity=32.3232323232323, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=31.9796954314721, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17559104, Length=201, Percent_Identity=30.3482587064677, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI71994604, Length=202, Percent_Identity=30.6930693069307, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562904, Length=197, Percent_Identity=28.4263959390863, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.9644670050761, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17538486, Length=194, Percent_Identity=30.4123711340206, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=29.2553191489362, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=34.020618556701, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17555612, Length=230, Percent_Identity=31.304347826087, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71997099, Length=205, Percent_Identity=32.1951219512195, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=25.2427184466019, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=28.1914893617021, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193210355, Length=267, Percent_Identity=25.4681647940075, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=29.4416243654822, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17551412, Length=268, Percent_Identity=28.7313432835821, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17560676, Length=196, Percent_Identity=29.0816326530612, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=28.030303030303, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25152911, Length=210, Percent_Identity=30.952380952381, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203115, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193203117, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=197, Percent_Identity=36.5482233502538, Blast_Score=108, Evalue=7e-25, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=30.6451612903226, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319635, Length=194, Percent_Identity=29.8969072164948, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=187, Percent_Identity=28.8770053475936, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=37.037037037037, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=35.8288770053476, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI116007236, Length=196, Percent_Identity=34.6938775510204, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=36.0215053763441, Blast_Score=95, Evalue=6e-20, Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=34.4262295081967, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24651139, Length=193, Percent_Identity=33.6787564766839, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=35.0253807106599, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24644339, Length=189, Percent_Identity=31.7460317460317, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24640442, Length=196, Percent_Identity=31.6326530612245, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI116007234, Length=197, Percent_Identity=36.5482233502538, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI28571387, Length=197, Percent_Identity=35.5329949238579, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24641388, Length=199, Percent_Identity=34.6733668341709, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI23397609, Length=184, Percent_Identity=35.3260869565217, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=36.3128491620112, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24643142, Length=185, Percent_Identity=34.0540540540541, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24580925, Length=194, Percent_Identity=29.8969072164948, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=34.1836734693878, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24663911, Length=199, Percent_Identity=31.6582914572864, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24648944, Length=228, Percent_Identity=28.5087719298246, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI24648693, Length=201, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI21355889, Length=201, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI19922066, Length=295, Percent_Identity=26.7796610169492, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355319, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI24584752, Length=186, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21356301, Length=186, Percent_Identity=27.9569892473118, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355631, Length=276, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29525; Mature: 29525
Theoretical pI: Translated: 10.76; Mature: 10.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKKVALVTGASSGIGEATARQLHEAGFIVYGAARRADRMTALAASGVRTLSLDVTDETS CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCH AKNAVAEILAAEGRIDVLVNNAGYGSYGALEDVPMREARAQIEVNLFGLAHLTQLVLPAM HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCEEEEEEEHHHHHHHHHHHHH RAQRSGTIINISSMGGRFATPMGAWYHASKYAVEGLSDALRLELKRFGIAVLLIEPGSIR HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC TEWGAIAAEKLRTTSGQGPYAEQANAMAASLESSSRPDARMTSPTSVIAKAVTRAATARR CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC PRTRYRVGFGARPLILLSRILPDRTFDALVKRSSGVPA CCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCC >Mature Secondary Structure MIKKVALVTGASSGIGEATARQLHEAGFIVYGAARRADRMTALAASGVRTLSLDVTDETS CCCEEEEEECCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCH AKNAVAEILAAEGRIDVLVNNAGYGSYGALEDVPMREARAQIEVNLFGLAHLTQLVLPAM HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHCEEEEEEEHHHHHHHHHHHHH RAQRSGTIINISSMGGRFATPMGAWYHASKYAVEGLSDALRLELKRFGIAVLLIEPGSIR HHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC TEWGAIAAEKLRTTSGQGPYAEQANAMAASLESSSRPDARMTSPTSVIAKAVTRAATARR CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC PRTRYRVGFGARPLILLSRILPDRTFDALVKRSSGVPA CCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9139899; 9252185 [H]