| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is bcp [H]
Identifier: 158317384
GI number: 158317384
Start: 6849848
End: 6850342
Strand: Direct
Name: bcp [H]
Synonym: Franean1_5635
Alternate gene names: 158317384
Gene position: 6849848-6850342 (Clockwise)
Preceding gene: 158317383
Following gene: 158317387
Centisome position: 76.26
GC content: 67.88
Gene sequence:
>495_bases ATGACCGAGACCGAGACCGCCACCGCTGCCCGGCTCTCCCCCGGCGCCCCCGCCCCGGACTTCACCCTGCCCGACGCCGA CGGCAAGGACGTCTCGCTGGCGTCGTTCCGCGGGCGCAAGGTCGTCGTCTACTTCTACCCGGCCGCGTCCACGCCCGGGT GCACCAAACAGGCCTGCGACTTCCGCGACAACCTCGCGCTGCTCAACGACGCGGGTATCGACGTCCTCGGGATCTCACCG GACAAGCCGGCCAAGCTGGTCAAGTTCCGGGACAACGAGGGCCTCACCTTCCCGCTGCTCTCCGACCCTGAGCGGACCGT GCTCTCGGCCTACGGAGCCTTCGGCGAGAAGACGATGTACGGCAAGAAGACCATGGGCGTCATCCGCTCGACGTTCGTCA TCGACGCCGAGGGCAAGATCGAGAAGGCGCAGTACAACGTTCGCGCCACCGGCCACGTCGCGAAGCTGCTGAAGGAGATC GGCCTCGCCGGCTGA
Upstream 100 bases:
>100_bases GGTCCGCCGGCCGGCCGGACTGTCGGCCGTGGGGCCGCTTCGCTCGCGATGCCACTGCCACGTTTGCCGGCCCGCCGGGG CCACGACTAGCTTCTCCGTC
Downstream 100 bases:
>100_bases AGTCGGCCGGCTGAAGTCGGCCTCGCCGGCTCTCGCCGGCTGACCGCCGGCTCTCCCCCGTCACTCAGCTCGCGACCCGC AGGTCCCATCGCAGCAGCAC
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MTETETATAARLSPGAPAPDFTLPDADGKDVSLASFRGRKVVVYFYPAASTPGCTKQACDFRDNLALLNDAGIDVLGISP DKPAKLVKFRDNEGLTFPLLSDPERTVLSAYGAFGEKTMYGKKTMGVIRSTFVIDAEGKIEKAQYNVRATGHVAKLLKEI GLAG
Sequences:
>Translated_164_residues MTETETATAARLSPGAPAPDFTLPDADGKDVSLASFRGRKVVVYFYPAASTPGCTKQACDFRDNLALLNDAGIDVLGISP DKPAKLVKFRDNEGLTFPLLSDPERTVLSAYGAFGEKTMYGKKTMGVIRSTFVIDAEGKIEKAQYNVRATGHVAKLLKEI GLAG >Mature_163_residues TETETATAARLSPGAPAPDFTLPDADGKDVSLASFRGRKVVVYFYPAASTPGCTKQACDFRDNLALLNDAGIDVLGISPD KPAKLVKFRDNEGLTFPLLSDPERTVLSAYGAFGEKTMYGKKTMGVIRSTFVIDAEGKIEKAQYNVRATGHVAKLLKEIG LAG
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=50.3311258278146, Blast_Score=154, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6322180, Length=149, Percent_Identity=38.255033557047, Blast_Score=85, Evalue=7e-18,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 17517; Mature: 17386
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETETATAARLSPGAPAPDFTLPDADGKDVSLASFRGRKVVVYFYPAASTPGCTKQACD CCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHCC FRDNLALLNDAGIDVLGISPDKPAKLVKFRDNEGLTFPLLSDPERTVLSAYGAFGEKTMY CCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCCCC GKKTMGVIRSTFVIDAEGKIEKAQYNVRATGHVAKLLKEIGLAG CHHHHHHEEEEEEEECCCCEEEEEEEEEECHHHHHHHHHHCCCC >Mature Secondary Structure TETETATAARLSPGAPAPDFTLPDADGKDVSLASFRGRKVVVYFYPAASTPGCTKQACD CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCHHHCC FRDNLALLNDAGIDVLGISPDKPAKLVKFRDNEGLTFPLLSDPERTVLSAYGAFGEKTMY CCCCEEEEECCCEEEEECCCCCCCEEEEEECCCCCEEEECCCCHHHHHHHHCCCCCCCCC GKKTMGVIRSTFVIDAEGKIEKAQYNVRATGHVAKLLKEIGLAG CHHHHHHEEEEEEEECCCCEEEEEEEEEECHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]