Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

Click here to switch to the map view.

The map label for this gene is 158317234

Identifier: 158317234

GI number: 158317234

Start: 6629178

End: 6630506

Strand: Reverse

Name: 158317234

Synonym: Franean1_5481

Alternate gene names: NA

Gene position: 6630506-6629178 (Counterclockwise)

Preceding gene: 158317235

Following gene: 158317233

Centisome position: 73.82

GC content: 75.47

Gene sequence:

>1329_bases
GTGACCGTCGCGGTCGTCCCGTTCGTCGCGGCCGCCTTCCTGCTCGCCGGCTCGGTGGCGGCGCGGCGGGCGCCGGACCC
TCGGGCCGCCCGGGCCGCCGCGGCCGGGTATGTCACCGTCACGGCCCTCGGCGTCGCCGCGACGATGGCCGTCGCCCGCT
GGACCGGGTGGCCTGACGGCCACCGGGTGGTCCTGCTCGCCCCCGGGTCCGGGTGGTGGCTGCCGTTCGTGACCTGCCTG
GCCGGTCTCGGTGCCACCGCACTGGCCCCGATCACCCCACCCCTGACCGCCGCAACGCGTGGCGACGCACGGGCGGTCAC
CTCTCACGACCAGGCGACATTCGCGCGGATCATGCTCGTTCTCGCCTGCGGCGCGGCGGCGACGGCGGTGGCTGATCCGG
TCGCGGCTGTGATCTCGTGGGCGCTTTCGGCCTGCGTCGTGTGGCGGGAAATGCGTGAGCGCGCCCCCGGCCGCGGCCCG
ACCCGGCTGTTCGCCCTGCACCACTTCGTGGGAGTCGGGGCCTGCGCTGCCGGGCTGCTCCTGGCCGACGGGCTCGGCGG
CACAGCGGCCGCACTGCTGCTCGTGGCCGGCGTTGGTGTCCGCCAGTGCCTACTGCCACTGCATCTGTGGTTCGAGCCCT
TCGCTCGGACGGCCCCAGCCGGGCTGGTCGTCGCCTTCACCGCCGGGCCCGCGGGCGTTCTGCTGCTCCCCGAGGTCGGA
CGGGCTGTGCCGGACCGCGGCTGGGCCGTCGCCGCGGCCGCGGTGACCGCCCTGCTGGGCGCCGGACTCGGGCTCGTCGC
CCGGGACGTCCGGTCCGCGCTGGCTCAGGTCGGCCTGGTGCTCTCCGGCATCGTGAGCTGCGGGGTTCTCATCGGGTCCG
AGCCGGCGCGGTCGGGGGCCGTCCTGGCCTGGCAGGTCGGCGCCGTCGCCGCGGGCGGTGCGATGATGATCGCCGCGGCG
ACCGAGGCCCGGCGGGGCCCGATGCTCCTGACCGGCCCGGGTGGCTGCTTCGCCCGCACGCCGCGGCTCGCCGTCGCGTT
CCTGCTGTTCGGGCTGACGTCGATCGGGTTCCCGGCGACCCTCGGCTTCATCTGGGAGGACCTGCTGCTGGACGGTGTGG
GCGACTGGTCGCTGCCGGTGACCGGCGTCCTCGTCCTCGCGATCGCCGGAGCCGGTGCGACGGTGATGAAGTGGTATTTC
GCCGGCTACACCGGCCGGCGTGACCATGTCGGCGAGCAGGACCTGACCCCGCGCGAGTCCAACGCCGTCACCGTCCTGCT
GGCCGCGCTGATCCTCGGCGAGCTTGCCCCCGCCCTCCTCCTCCCCTGA

Upstream 100 bases:

>100_bases
GTTCGCCCACCGTCGGCGCCTCGCGTTGGCGCCACCAGGAGGACCGGCCCCGGTTCCCCGCGGATGTCCGCCCCGTCCGC
CCCCGGGGAGGAGGGCCCTG

Downstream 100 bases:

>100_bases
TCACACACCCCACGCTCCCCGCACCCCACCCGACTGGCGACCGGCCGGTCGCCCTCGCACCGGACTGGTCGACGCCGCGC
GCTGGACTCGTCGCGGCTCT

Product: hypothetical protein

Products: NAD+; ubiquinol

Alternate protein names: None

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCL
AGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGP
TRLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG
RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAA
TEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYF
AGYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP

Sequences:

>Translated_442_residues
MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCL
AGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGP
TRLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG
RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAA
TEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYF
AGYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP
>Mature_441_residues
TVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCLA
GLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPT
RLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVGR
AVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAAT
EARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFA
GYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP

Specific function: Unknown

COG id: COG1008

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 4 (chain M)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.6.5.3

Molecular weight: Translated: 44628; Mature: 44497

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDG
CEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
HRVVLLAPGSGWWLPFVTCLAGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLV
CEEEEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHH
LACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPTRLFALHHFVGVGACAAGLL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG
HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECHHC
RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGA
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VLAWQVGAVAAGGAMMIAAATEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPAT
EEEEECCHHHCCCEEEEEEHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHH
LGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFAGYTGRRDHVGEQDLTPRES
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
NAVTVLLAALILGELAPALLLP
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDG
EEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
HRVVLLAPGSGWWLPFVTCLAGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLV
CEEEEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHH
LACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPTRLFALHHFVGVGACAAGLL
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG
HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECHHC
RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGA
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
VLAWQVGAVAAGGAMMIAAATEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPAT
EEEEECCHHHCCCEEEEEEHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHH
LGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFAGYTGRRDHVGEQDLTPRES
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
NAVTVLLAALILGELAPALLLP
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA