| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317234
Identifier: 158317234
GI number: 158317234
Start: 6629178
End: 6630506
Strand: Reverse
Name: 158317234
Synonym: Franean1_5481
Alternate gene names: NA
Gene position: 6630506-6629178 (Counterclockwise)
Preceding gene: 158317235
Following gene: 158317233
Centisome position: 73.82
GC content: 75.47
Gene sequence:
>1329_bases GTGACCGTCGCGGTCGTCCCGTTCGTCGCGGCCGCCTTCCTGCTCGCCGGCTCGGTGGCGGCGCGGCGGGCGCCGGACCC TCGGGCCGCCCGGGCCGCCGCGGCCGGGTATGTCACCGTCACGGCCCTCGGCGTCGCCGCGACGATGGCCGTCGCCCGCT GGACCGGGTGGCCTGACGGCCACCGGGTGGTCCTGCTCGCCCCCGGGTCCGGGTGGTGGCTGCCGTTCGTGACCTGCCTG GCCGGTCTCGGTGCCACCGCACTGGCCCCGATCACCCCACCCCTGACCGCCGCAACGCGTGGCGACGCACGGGCGGTCAC CTCTCACGACCAGGCGACATTCGCGCGGATCATGCTCGTTCTCGCCTGCGGCGCGGCGGCGACGGCGGTGGCTGATCCGG TCGCGGCTGTGATCTCGTGGGCGCTTTCGGCCTGCGTCGTGTGGCGGGAAATGCGTGAGCGCGCCCCCGGCCGCGGCCCG ACCCGGCTGTTCGCCCTGCACCACTTCGTGGGAGTCGGGGCCTGCGCTGCCGGGCTGCTCCTGGCCGACGGGCTCGGCGG CACAGCGGCCGCACTGCTGCTCGTGGCCGGCGTTGGTGTCCGCCAGTGCCTACTGCCACTGCATCTGTGGTTCGAGCCCT TCGCTCGGACGGCCCCAGCCGGGCTGGTCGTCGCCTTCACCGCCGGGCCCGCGGGCGTTCTGCTGCTCCCCGAGGTCGGA CGGGCTGTGCCGGACCGCGGCTGGGCCGTCGCCGCGGCCGCGGTGACCGCCCTGCTGGGCGCCGGACTCGGGCTCGTCGC CCGGGACGTCCGGTCCGCGCTGGCTCAGGTCGGCCTGGTGCTCTCCGGCATCGTGAGCTGCGGGGTTCTCATCGGGTCCG AGCCGGCGCGGTCGGGGGCCGTCCTGGCCTGGCAGGTCGGCGCCGTCGCCGCGGGCGGTGCGATGATGATCGCCGCGGCG ACCGAGGCCCGGCGGGGCCCGATGCTCCTGACCGGCCCGGGTGGCTGCTTCGCCCGCACGCCGCGGCTCGCCGTCGCGTT CCTGCTGTTCGGGCTGACGTCGATCGGGTTCCCGGCGACCCTCGGCTTCATCTGGGAGGACCTGCTGCTGGACGGTGTGG GCGACTGGTCGCTGCCGGTGACCGGCGTCCTCGTCCTCGCGATCGCCGGAGCCGGTGCGACGGTGATGAAGTGGTATTTC GCCGGCTACACCGGCCGGCGTGACCATGTCGGCGAGCAGGACCTGACCCCGCGCGAGTCCAACGCCGTCACCGTCCTGCT GGCCGCGCTGATCCTCGGCGAGCTTGCCCCCGCCCTCCTCCTCCCCTGA
Upstream 100 bases:
>100_bases GTTCGCCCACCGTCGGCGCCTCGCGTTGGCGCCACCAGGAGGACCGGCCCCGGTTCCCCGCGGATGTCCGCCCCGTCCGC CCCCGGGGAGGAGGGCCCTG
Downstream 100 bases:
>100_bases TCACACACCCCACGCTCCCCGCACCCCACCCGACTGGCGACCGGCCGGTCGCCCTCGCACCGGACTGGTCGACGCCGCGC GCTGGACTCGTCGCGGCTCT
Product: hypothetical protein
Products: NAD+; ubiquinol
Alternate protein names: None
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCL AGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGP TRLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAA TEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYF AGYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP
Sequences:
>Translated_442_residues MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCL AGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGP TRLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAA TEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYF AGYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP >Mature_441_residues TVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDGHRVVLLAPGSGWWLPFVTCLA GLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLVLACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPT RLFALHHFVGVGACAAGLLLADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVGR AVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGAVLAWQVGAVAAGGAMMIAAAT EARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPATLGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFA GYTGRRDHVGEQDLTPRESNAVTVLLAALILGELAPALLLP
Specific function: Unknown
COG id: COG1008
COG function: function code C; NADH:ubiquinone oxidoreductase subunit 4 (chain M)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.6.5.3
Molecular weight: Translated: 44628; Mature: 44497
Theoretical pI: Translated: 8.94; Mature: 8.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDG CEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC HRVVLLAPGSGWWLPFVTCLAGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLV CEEEEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHH LACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPTRLFALHHFVGVGACAAGLL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECHHC RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGA CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VLAWQVGAVAAGGAMMIAAATEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPAT EEEEECCHHHCCCEEEEEEHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHH LGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFAGYTGRRDHVGEQDLTPRES HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC NAVTVLLAALILGELAPALLLP CHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TVAVVPFVAAAFLLAGSVAARRAPDPRAARAAAAGYVTVTALGVAATMAVARWTGWPDG EEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC HRVVLLAPGSGWWLPFVTCLAGLGATALAPITPPLTAATRGDARAVTSHDQATFARIMLV CEEEEEECCCCCHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHH LACGAAATAVADPVAAVISWALSACVVWREMRERAPGRGPTRLFALHHFVGVGACAAGLL HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH LADGLGGTAAALLLVAGVGVRQCLLPLHLWFEPFARTAPAGLVVAFTAGPAGVLLLPEVG HHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECHHC RAVPDRGWAVAAAAVTALLGAGLGLVARDVRSALAQVGLVLSGIVSCGVLIGSEPARSGA CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC VLAWQVGAVAAGGAMMIAAATEARRGPMLLTGPGGCFARTPRLAVAFLLFGLTSIGFPAT EEEEECCHHHCCCEEEEEEHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHH LGFIWEDLLLDGVGDWSLPVTGVLVLAIAGAGATVMKWYFAGYTGRRDHVGEQDLTPRES HHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC NAVTVLLAALILGELAPALLLP CHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NADH; H+; ubiquinone
Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA