| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158317113
Identifier: 158317113
GI number: 158317113
Start: 6461468
End: 6462817
Strand: Reverse
Name: 158317113
Synonym: Franean1_5357
Alternate gene names: NA
Gene position: 6462817-6461468 (Counterclockwise)
Preceding gene: 158317114
Following gene: 158317112
Centisome position: 71.95
GC content: 67.19
Gene sequence:
>1350_bases ATGACCGTGGCGCAGGATGTGGACGGAGCAACAGACGGGTCATCCGGGGCGGACGGGCTGACCGTTCGCTTGACGGCGTG GGAGGCCCAAGTCAACGCGCTCGCAGTCCTGCAGCTGTGTGCGACCGGCAAGCTGCGGTGCAGTGAGAAGACACAGCGGC CGGGTGCGGCCACCGTCACGGCGGTCGCCGGAGTGTTGCTCCGTGGCGATTTCTATCTCACCGAGCCGATCGCGGCGTTC GCCTGGCCGCTGTTGCTGCAGGCCGGTGGGCTGGCAGAGGTTAGCGGGGGACGTCTGGTGCTGACAGCGCGGGGCCGGTC GGTGCTGGCCAAACCGGCGGCGGAGACCATCCGGCAGCTGTGGAGGCGCTGGGTCGGCCATGCGGTCCTCGACGAGATGA GCCGGATCGAGACGATCAAGGGTCAGCGGTCCGCCCGGGCGCTGACCGCGGCAGGTCCCCGGCGCAAGGCCGTTGCCGAG GCGCTCGCGGCCTGCCCGCCAGGCGAGTGGGTGGCGGTGGACATGCTTTTCACCCGGATACGGCGTGGAGGACCGCCGTT CACCGTCGCACGTGACGTCTGGAAGCTGTACATCGAAGATCCGCAGTACGGCAGCCTGGGATATGACGGGTTCCACGACT GGCCGCTGCTGGAGGGCCGGTATCTGCTGTGTCTGCTGTTCGAGTACGCGGGCACGCTTGGCCTCTTTGATCTCACCTAC GGCGATCCAGTTGACGCCCGTGACGATTTCCGCGAGAACTGGGGCGCTGACGACCTGGACTTCCTCAGCCGGTACGACGG TTTGCGTGCCGTGCGGATGAACGCCCTCGGCGCCTATGCGTTCGGCCTGGCTGACCGGTACGAGCCCGAGGGGGACAGCA CCGCAGCCGGTCCAGCGCTCAAGATCCTGCCGAACCTGGACATCGTCATCACCGGTGAGGTCCAACCGGCCGACGAACTC CTCCTGAGCGTTTACGGGCAGCGCGCCTCCGATCGCATCTGGTCCCTGACCATCAAGTCGTTGATGGCCGCGATCGACGC GGGTAGACCAGTCGAGGAGCTGCGGCGGTTCCTGACCGACCGCGCGGACCATGAGCTACCGGCCACCGTTGCCAAGCTCT TCGAGGACGTCACCGCCCGCGCCGGCCAACTACGGGATCTCGGGTTGGCGCGAGTGATCGAATGTGTCGACCCGGCGGTG GCCGCCCTCATCGCTAACGACCGCAAACTCCGCCGACTCTGCACCCTGGTAGGCGATCGTCACATCGCTGTACCCTTGCA GCACGAGGCCGATTTCCGCGCAGCCCTGCGGAAGCTGGGATACGCCATACCTTCCTCGCCAGGGGCGTAG
Upstream 100 bases:
>100_bases TACCGGCGCTGCCGGTGGGCGGCGACACTTCCGCTGATGTGGGATCTGAAAGTAGGCGCGACCTCACCTGCGGCGAGGGT GGGTCGTAGGGTCAGTGGGC
Downstream 100 bases:
>100_bases CACCGTCGAGATTCCGCGGCACGACCGGCATCGGATGCCCGGGTACAGCACTTTCCTGTATACCGGACATGATGAATCGA GACGGAGAGGCTTCGCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MTVAQDVDGATDGSSGADGLTVRLTAWEAQVNALAVLQLCATGKLRCSEKTQRPGAATVTAVAGVLLRGDFYLTEPIAAF AWPLLLQAGGLAEVSGGRLVLTARGRSVLAKPAAETIRQLWRRWVGHAVLDEMSRIETIKGQRSARALTAAGPRRKAVAE ALAACPPGEWVAVDMLFTRIRRGGPPFTVARDVWKLYIEDPQYGSLGYDGFHDWPLLEGRYLLCLLFEYAGTLGLFDLTY GDPVDARDDFRENWGADDLDFLSRYDGLRAVRMNALGAYAFGLADRYEPEGDSTAAGPALKILPNLDIVITGEVQPADEL LLSVYGQRASDRIWSLTIKSLMAAIDAGRPVEELRRFLTDRADHELPATVAKLFEDVTARAGQLRDLGLARVIECVDPAV AALIANDRKLRRLCTLVGDRHIAVPLQHEADFRAALRKLGYAIPSSPGA
Sequences:
>Translated_449_residues MTVAQDVDGATDGSSGADGLTVRLTAWEAQVNALAVLQLCATGKLRCSEKTQRPGAATVTAVAGVLLRGDFYLTEPIAAF AWPLLLQAGGLAEVSGGRLVLTARGRSVLAKPAAETIRQLWRRWVGHAVLDEMSRIETIKGQRSARALTAAGPRRKAVAE ALAACPPGEWVAVDMLFTRIRRGGPPFTVARDVWKLYIEDPQYGSLGYDGFHDWPLLEGRYLLCLLFEYAGTLGLFDLTY GDPVDARDDFRENWGADDLDFLSRYDGLRAVRMNALGAYAFGLADRYEPEGDSTAAGPALKILPNLDIVITGEVQPADEL LLSVYGQRASDRIWSLTIKSLMAAIDAGRPVEELRRFLTDRADHELPATVAKLFEDVTARAGQLRDLGLARVIECVDPAV AALIANDRKLRRLCTLVGDRHIAVPLQHEADFRAALRKLGYAIPSSPGA >Mature_448_residues TVAQDVDGATDGSSGADGLTVRLTAWEAQVNALAVLQLCATGKLRCSEKTQRPGAATVTAVAGVLLRGDFYLTEPIAAFA WPLLLQAGGLAEVSGGRLVLTARGRSVLAKPAAETIRQLWRRWVGHAVLDEMSRIETIKGQRSARALTAAGPRRKAVAEA LAACPPGEWVAVDMLFTRIRRGGPPFTVARDVWKLYIEDPQYGSLGYDGFHDWPLLEGRYLLCLLFEYAGTLGLFDLTYG DPVDARDDFRENWGADDLDFLSRYDGLRAVRMNALGAYAFGLADRYEPEGDSTAAGPALKILPNLDIVITGEVQPADELL LSVYGQRASDRIWSLTIKSLMAAIDAGRPVEELRRFLTDRADHELPATVAKLFEDVTARAGQLRDLGLARVIECVDPAVA ALIANDRKLRRLCTLVGDRHIAVPLQHEADFRAALRKLGYAIPSSPGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48749; Mature: 48618
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVAQDVDGATDGSSGADGLTVRLTAWEAQVNALAVLQLCATGKLRCSEKTQRPGAATVT CCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHH AVAGVLLRGDFYLTEPIAAFAWPLLLQAGGLAEVSGGRLVLTARGRSVLAKPAAETIRQL HHHHHHHCCCEEECCHHHHHHHHHHHHCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHH WRRWVGHAVLDEMSRIETIKGQRSARALTAAGPRRKAVAEALAACPPGEWVAVDMLFTRI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHH RRGGPPFTVARDVWKLYIEDPQYGSLGYDGFHDWPLLEGRYLLCLLFEYAGTLGLFDLTY HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC GDPVDARDDFRENWGADDLDFLSRYDGLRAVRMNALGAYAFGLADRYEPEGDSTAAGPAL CCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE KILPNLDIVITGEVQPADELLLSVYGQRASDRIWSLTIKSLMAAIDAGRPVEELRRFLTD EECCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RADHELPATVAKLFEDVTARAGQLRDLGLARVIECVDPAVAALIANDRKLRRLCTLVGDR CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC HIAVPLQHEADFRAALRKLGYAIPSSPGA EEEEECCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TVAQDVDGATDGSSGADGLTVRLTAWEAQVNALAVLQLCATGKLRCSEKTQRPGAATVT CCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCHHHH AVAGVLLRGDFYLTEPIAAFAWPLLLQAGGLAEVSGGRLVLTARGRSVLAKPAAETIRQL HHHHHHHCCCEEECCHHHHHHHHHHHHCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHH WRRWVGHAVLDEMSRIETIKGQRSARALTAAGPRRKAVAEALAACPPGEWVAVDMLFTRI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEHHHHHHHHH RRGGPPFTVARDVWKLYIEDPQYGSLGYDGFHDWPLLEGRYLLCLLFEYAGTLGLFDLTY HCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC GDPVDARDDFRENWGADDLDFLSRYDGLRAVRMNALGAYAFGLADRYEPEGDSTAAGPAL CCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE KILPNLDIVITGEVQPADELLLSVYGQRASDRIWSLTIKSLMAAIDAGRPVEELRRFLTD EECCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH RADHELPATVAKLFEDVTARAGQLRDLGLARVIECVDPAVAALIANDRKLRRLCTLVGDR CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC HIAVPLQHEADFRAALRKLGYAIPSSPGA EEEEECCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA