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The map label for this gene is intD [C]

Identifier: 158317079

GI number: 158317079

Start: 6413690

End: 6414958

Strand: Reverse

Name: intD [C]

Synonym: Franean1_5323

Alternate gene names: 158317079

Gene position: 6414958-6413690 (Counterclockwise)

Preceding gene: 158317080

Following gene: 158317077

Centisome position: 71.42

GC content: 70.13

Gene sequence:

>1269_bases
ATGCCCAGCAACACCAACGGCCCGGCGAACGGCCGGCGCAAGGAACGCACCAAGCGCGCGAACGGTCAGGGCTCGATCTA
CCAGCGCGGGGACGGCCTGTGGGCCGGCGCGGCCTACGTCCTCATGCCGGACGGCACGACGAAGCGGCGGCCGGTCTACG
GCAAGTCGGAGGAGATCGTCCGCGGCAAGCTGACCGAGCTTCAGGCCAACTCGGATCAGGGCATTCCGGCGGACGCTACC
GGGTGGACGGTCGAGCGGTACCTGACGGCCTGGCTCGCTCAGACCGTGAAGCCGAACCGTCAGCCGAACACGTACGTGAC
CTATGAGAAGGCGGTCCGGATCTACCTCGTGCCGGGTCTCGGGAAGAAGCGGCTGAACAGGCTGACCGGTGCGGACGTCC
GGCAGTTCATCCGGCGGACGGAGAGCACCTGCCGGTGCTGCGCCCGGGGAGTGGACAAGGCACGACCGGAGGAGGAGCGG
CGTTGCTGCGCGGTCGGCCGGTGCTGCAAGCGGTTGCCGTCGAAGCGTCAGGTTCAGGTCGTGCATGCGGTGCTGCGTAA
CGCTCTCCAGGCGGCGGTCCGGGAGGAGCTGATCCGGCGGAACGTCGCGAAGCTGGTGCAGGTCTCCACCCCGCGCTACG
GCGTCGACCGCGGCCTGACCGTCGAGCAGGCGCATCAGCTCCTCGACGCGGCGGCGGGCGACCGGCTGTACGCGCTGCTG
GTCCTGGCGCTGTTCCTCGGGATGCGGCGCGGGGAGTTGCTCGGTCTGCAGTGGTCGGACATCGACTCTGAGCGGGAGAC
GCTGACGGTGCGTCACACGCTGCTGCGGGTCGGCGGGGAGCTGCGGCTGTGCCCGCCGAAGACGGAGGACTCCGAACGGA
CGCTGCCGCTCCTCGGCCTGGTCGCGGATGCGCTGGCGGAGCATCGCAAGCTCCAGGACGCTGAACGTGCGGCGGCCGGC
GACGCCTGGGTGCAGACCGGCCACGTGTTCACGACGAAGATCGGGACTCCGATCGAACCGGACAACCTGCGCCGGTTCTG
GCTGCCGCTGCGCCGTGCGGTCGGGCTCGACGGGGTGGTGTTTCACGGGCTGCGGCACACCTGCGTGACGCTGCTCCTGG
ACCTCGGTGTGCCGCCGCACATCGTCCGGGACATCGCGGGCCACTCGGCGATCGAGGTGACGATGACGATCTACGCGCAT
GCCTCGATGGGGGAGAAGCGGCGCGCCCTGGGCAAGCTCGACGGCCACCTGACCGAGCCCCGGGACTGA

Upstream 100 bases:

>100_bases
ACCATCCCAGCGCCAGAGAACGGAAACCCACCGGCACCGGGCGACGCCACCTGCGGCCCGCGTGCACCTGACCCGTTCTT
CCGGCAAGGAGAAGCCACCC

Downstream 100 bases:

>100_bases
GGGCCGTTGCTGCACCCGTTGCTACAAAACGCCTCCGTCAGCAAGATCGGCGGGGGCGTTTTGGCTGGTGCGCCCGGCAG
GGATCGAACCTGCGACCCAG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MPSNTNGPANGRRKERTKRANGQGSIYQRGDGLWAGAAYVLMPDGTTKRRPVYGKSEEIVRGKLTELQANSDQGIPADAT
GWTVERYLTAWLAQTVKPNRQPNTYVTYEKAVRIYLVPGLGKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARPEEER
RCCAVGRCCKRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVEQAHQLLDAAAGDRLYALL
VLALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERAAAG
DAWVQTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLDGVVFHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAH
ASMGEKRRALGKLDGHLTEPRD

Sequences:

>Translated_422_residues
MPSNTNGPANGRRKERTKRANGQGSIYQRGDGLWAGAAYVLMPDGTTKRRPVYGKSEEIVRGKLTELQANSDQGIPADAT
GWTVERYLTAWLAQTVKPNRQPNTYVTYEKAVRIYLVPGLGKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARPEEER
RCCAVGRCCKRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVEQAHQLLDAAAGDRLYALL
VLALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERAAAG
DAWVQTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLDGVVFHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAH
ASMGEKRRALGKLDGHLTEPRD
>Mature_421_residues
PSNTNGPANGRRKERTKRANGQGSIYQRGDGLWAGAAYVLMPDGTTKRRPVYGKSEEIVRGKLTELQANSDQGIPADATG
WTVERYLTAWLAQTVKPNRQPNTYVTYEKAVRIYLVPGLGKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARPEEERR
CCAVGRCCKRLPSKRQVQVVHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVEQAHQLLDAAAGDRLYALLV
LALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGLVADALAEHRKLQDAERAAAGD
AWVQTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLDGVVFHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAHA
SMGEKRRALGKLDGHLTEPRD

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46981; Mature: 46850

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSNTNGPANGRRKERTKRANGQGSIYQRGDGLWAGAAYVLMPDGTTKRRPVYGKSEEIV
CCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEECEEEEEECCCCCCCCCCCCCCHHHH
RGKLTELQANSDQGIPADATGWTVERYLTAWLAQTVKPNRQPNTYVTYEKAVRIYLVPGL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCEEEEEECCC
GKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARPEEERRCCAVGRCCKRLPSKRQVQV
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
VHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVEQAHQLLDAAAGDRLYALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
VLALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGL
HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHH
VADALAEHRKLQDAERAAAGDAWVQTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLDGVV
HHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
FHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAHASMGEKRRALGKLDGHLTEP
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCC
RD
CC
>Mature Secondary Structure 
PSNTNGPANGRRKERTKRANGQGSIYQRGDGLWAGAAYVLMPDGTTKRRPVYGKSEEIV
CCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEECEEEEEECCCCCCCCCCCCCCHHHH
RGKLTELQANSDQGIPADATGWTVERYLTAWLAQTVKPNRQPNTYVTYEKAVRIYLVPGL
HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCEEEEEECCC
GKKRLNRLTGADVRQFIRRTESTCRCCARGVDKARPEEERRCCAVGRCCKRLPSKRQVQV
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
VHAVLRNALQAAVREELIRRNVAKLVQVSTPRYGVDRGLTVEQAHQLLDAAAGDRLYALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHH
VLALFLGMRRGELLGLQWSDIDSERETLTVRHTLLRVGGELRLCPPKTEDSERTLPLLGL
HHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHH
VADALAEHRKLQDAERAAAGDAWVQTGHVFTTKIGTPIEPDNLRRFWLPLRRAVGLDGVV
HHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
FHGLRHTCVTLLLDLGVPPHIVRDIAGHSAIEVTMTIYAHASMGEKRRALGKLDGHLTEP
HHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCCC
RD
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]