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The map label for this gene is aglA [H]

Identifier: 158317072

GI number: 158317072

Start: 6403091

End: 6404875

Strand: Direct

Name: aglA [H]

Synonym: Franean1_5316

Alternate gene names: 158317072

Gene position: 6403091-6404875 (Clockwise)

Preceding gene: 158317070

Following gene: 158317073

Centisome position: 71.29

GC content: 74.73

Gene sequence:

>1785_bases
ATGGATCCCGTTGTCGCATACCGTGCGGGCGAACCCGGGCAGCCCGGCGGCCGCTCCGGCCCGGCCGCGCCACCAGCGGG
AACCGAGGAGACCGATTACTCGGCGTGGTGGCACGACGCCGTGATGTACGAGGTCTACGTCCGCAGCTTCGCCGACGCCG
ACGGCGACGGGGTCGGCGACATCGAGGGCATCCGCCGGCGCCTGCCCGATCTCGCCGACCTGGGCGTCGACGGGATCTGG
GTCAGCCCCTTCTACCGCTCCCCCATGGCCGATCACGGCTACGACGTGGCCGACCACACCGACGTCGATCCCTTGTTCGG
CACTCTCTCGGACATCGACGCGCTGCTGCGCGACGCCCACGAGGCCGGCCTGAAAGTCGTCGTCGACCTGGTCCCGAACC
ACTCCAGCAGCGCGCACCCCGCCTTCCAGGCGGCGCTCGCGGCCGGGCCGGACGCGCCGGAGCGGGACCTCTACCTTTTC
CGGGACGGGCGCGGCCCGGACGGTGCGCTCCCCCCGAACAACTGGATCTCGGTGTTCGGTGGCCCCGCCTGGACGAGGGT
TCCGGACGGCCAGTGGTACCTGCACCTGTTCGCCCCGGAGCAGCCGGACTGGAACTGGCAGCATCCGCGGGTGCGGGCGG
CGCACGCCGAGATCATCCGATTCTGGCTCGACCGGGGGGTCGACGGCTTCCGGATCGACGTCTCGCACGGCCTGGTCAAG
GACGGCGAGCTGCGCGACCATCCGACCGGCGCGCTCCCCACGCCGGAGACCGGCTTCCGGGAGGAGATCGAGCCGCACGC
GTGGGATCAGGACGGCGTCCACGAGATCTACCGCGAGTGGCGGGCGATCGTCGACGCCCACGACCGGCGCGACGGCCGAC
AGCGGGTGCTCGTCGGCGAGACCTGGGTCGCCGACCCGGGGCGCCTCGCCCGGTACGTCCGTCCCGACGAGCTGCACCTG
ACCTTCACGTTCTCGCTGCTGTACGCGCCGTTCTCCGCCCCGGCGTGGCGGGCGGCGATCGATGCCGCCCGGGCCGCGAC
AGCCGCCGTCTGCGCGCCGCCGACCTGGGTGCTGGCCAACCACGACGTCGTCCGTCCGGTCAGCCGCTACGGCGGCGGCG
AGACCGGCCTGCGCCGGGCCCGGGCGGCGCTGCTGACGCTGCTGGCGCTGCCCGGCACGGTCTACCTGTACCAGGGCGAC
GAACTCGGCCTGCCGCAGGTCGACATCCCGCCCGAGGCCCGCCAGGACCCGGTCTGGGAACGGTCCGGCCACACCTCGCC
CGGCCGGGACGGCGCACGCGTGCCGCTGCCGTGGTCCGGCGACGCGCCTCCGTACGGGTTCAGCGCCGGGGCAGCCGAGC
CGTGGCTCCCGCAACCGCCCGACTGGGCGACGCTGACCGCGTCCGCCCAGTCCGTGGACCCGATGTCGACCAGGGTGCTC
GTCCGCGGCGCGCTGGCGCTACGCCGCGCGCTCCCCTTCCTCGGCGGACCGGCCGGGCCGGGCAGCGCGGCCGAGCCGGC
CGAGCCGGGGCACTCGGGCGAGCCGGGGCGGCCGGCAGGCACGCGGCCCGGGTTCCGCTGGCGGGACGATCTGCCCGCGG
ACTGCCTGGCCTTCGACCGGACGTCCGCCGCCGGCGCCCTGACCTGTGTGATGGCCACGCGGAGCGAGATACGCCTGGAG
ATCGCCGGCCGGCTGGTGCTGGCGAGCGGGCCAGTCGGCTACGACGGCGCGACGCTCGTCCTGCCACCGGACACCACCGC
GTGGGTCATCCCCCGTTCGGGTTGA

Upstream 100 bases:

>100_bases
CGAGAGTCGGACATCGCGCCCGCCGAGCCGTTCGACGGACACTTTCCGTAACCGGAGCATCCCGTTTACTTCATGCCCGC
AGAGAGGGTTTGATGCTGGC

Downstream 100 bases:

>100_bases
CCCACCCGGCTACCGCCGCACGGCGGACGTCCACCGCCCGTCGAACCGCTCACCTCGGAAGACCCGGCCACGACCACCAC
CGGGCCGGACGTCCCGTCGA

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 594; Mature: 594

Protein sequence:

>594_residues
MDPVVAYRAGEPGQPGGRSGPAAPPAGTEETDYSAWWHDAVMYEVYVRSFADADGDGVGDIEGIRRRLPDLADLGVDGIW
VSPFYRSPMADHGYDVADHTDVDPLFGTLSDIDALLRDAHEAGLKVVVDLVPNHSSSAHPAFQAALAAGPDAPERDLYLF
RDGRGPDGALPPNNWISVFGGPAWTRVPDGQWYLHLFAPEQPDWNWQHPRVRAAHAEIIRFWLDRGVDGFRIDVSHGLVK
DGELRDHPTGALPTPETGFREEIEPHAWDQDGVHEIYREWRAIVDAHDRRDGRQRVLVGETWVADPGRLARYVRPDELHL
TFTFSLLYAPFSAPAWRAAIDAARAATAAVCAPPTWVLANHDVVRPVSRYGGGETGLRRARAALLTLLALPGTVYLYQGD
ELGLPQVDIPPEARQDPVWERSGHTSPGRDGARVPLPWSGDAPPYGFSAGAAEPWLPQPPDWATLTASAQSVDPMSTRVL
VRGALALRRALPFLGGPAGPGSAAEPAEPGHSGEPGRPAGTRPGFRWRDDLPADCLAFDRTSAAGALTCVMATRSEIRLE
IAGRLVLASGPVGYDGATLVLPPDTTAWVIPRSG

Sequences:

>Translated_594_residues
MDPVVAYRAGEPGQPGGRSGPAAPPAGTEETDYSAWWHDAVMYEVYVRSFADADGDGVGDIEGIRRRLPDLADLGVDGIW
VSPFYRSPMADHGYDVADHTDVDPLFGTLSDIDALLRDAHEAGLKVVVDLVPNHSSSAHPAFQAALAAGPDAPERDLYLF
RDGRGPDGALPPNNWISVFGGPAWTRVPDGQWYLHLFAPEQPDWNWQHPRVRAAHAEIIRFWLDRGVDGFRIDVSHGLVK
DGELRDHPTGALPTPETGFREEIEPHAWDQDGVHEIYREWRAIVDAHDRRDGRQRVLVGETWVADPGRLARYVRPDELHL
TFTFSLLYAPFSAPAWRAAIDAARAATAAVCAPPTWVLANHDVVRPVSRYGGGETGLRRARAALLTLLALPGTVYLYQGD
ELGLPQVDIPPEARQDPVWERSGHTSPGRDGARVPLPWSGDAPPYGFSAGAAEPWLPQPPDWATLTASAQSVDPMSTRVL
VRGALALRRALPFLGGPAGPGSAAEPAEPGHSGEPGRPAGTRPGFRWRDDLPADCLAFDRTSAAGALTCVMATRSEIRLE
IAGRLVLASGPVGYDGATLVLPPDTTAWVIPRSG
>Mature_594_residues
MDPVVAYRAGEPGQPGGRSGPAAPPAGTEETDYSAWWHDAVMYEVYVRSFADADGDGVGDIEGIRRRLPDLADLGVDGIW
VSPFYRSPMADHGYDVADHTDVDPLFGTLSDIDALLRDAHEAGLKVVVDLVPNHSSSAHPAFQAALAAGPDAPERDLYLF
RDGRGPDGALPPNNWISVFGGPAWTRVPDGQWYLHLFAPEQPDWNWQHPRVRAAHAEIIRFWLDRGVDGFRIDVSHGLVK
DGELRDHPTGALPTPETGFREEIEPHAWDQDGVHEIYREWRAIVDAHDRRDGRQRVLVGETWVADPGRLARYVRPDELHL
TFTFSLLYAPFSAPAWRAAIDAARAATAAVCAPPTWVLANHDVVRPVSRYGGGETGLRRARAALLTLLALPGTVYLYQGD
ELGLPQVDIPPEARQDPVWERSGHTSPGRDGARVPLPWSGDAPPYGFSAGAAEPWLPQPPDWATLTASAQSVDPMSTRVL
VRGALALRRALPFLGGPAGPGSAAEPAEPGHSGEPGRPAGTRPGFRWRDDLPADCLAFDRTSAAGALTCVMATRSEIRLE
IAGRLVLASGPVGYDGATLVLPPDTTAWVIPRSG

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI187423904, Length=467, Percent_Identity=30.406852248394, Blast_Score=231, Evalue=1e-60,
Organism=Escherichia coli, GI1790687, Length=494, Percent_Identity=34.2105263157895, Blast_Score=242, Evalue=5e-65,
Organism=Escherichia coli, GI1786604, Length=254, Percent_Identity=27.1653543307087, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI32565753, Length=383, Percent_Identity=26.1096605744125, Blast_Score=102, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI25147709, Length=491, Percent_Identity=25.050916496945, Blast_Score=91, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6321726, Length=499, Percent_Identity=33.6673346693387, Blast_Score=253, Evalue=7e-68,
Organism=Saccharomyces cerevisiae, GI6322241, Length=499, Percent_Identity=33.6673346693387, Blast_Score=246, Evalue=7e-66,
Organism=Saccharomyces cerevisiae, GI6322021, Length=499, Percent_Identity=33.6673346693387, Blast_Score=246, Evalue=7e-66,
Organism=Saccharomyces cerevisiae, GI6324416, Length=499, Percent_Identity=33.6673346693387, Blast_Score=246, Evalue=8e-66,
Organism=Saccharomyces cerevisiae, GI6319776, Length=506, Percent_Identity=32.4110671936759, Blast_Score=245, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6321731, Length=506, Percent_Identity=32.4110671936759, Blast_Score=245, Evalue=2e-65,
Organism=Saccharomyces cerevisiae, GI6322245, Length=498, Percent_Identity=31.7269076305221, Blast_Score=242, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24586587, Length=498, Percent_Identity=32.1285140562249, Blast_Score=260, Evalue=2e-69,
Organism=Drosophila melanogaster, GI24583749, Length=488, Percent_Identity=33.6065573770492, Blast_Score=259, Evalue=4e-69,
Organism=Drosophila melanogaster, GI24583747, Length=488, Percent_Identity=33.6065573770492, Blast_Score=259, Evalue=4e-69,
Organism=Drosophila melanogaster, GI24583745, Length=500, Percent_Identity=33.6, Blast_Score=255, Evalue=7e-68,
Organism=Drosophila melanogaster, GI24586593, Length=485, Percent_Identity=35.2577319587629, Blast_Score=254, Evalue=8e-68,
Organism=Drosophila melanogaster, GI24586597, Length=569, Percent_Identity=32.1616871704745, Blast_Score=253, Evalue=2e-67,
Organism=Drosophila melanogaster, GI24586599, Length=505, Percent_Identity=33.2673267326733, Blast_Score=249, Evalue=5e-66,
Organism=Drosophila melanogaster, GI221330053, Length=509, Percent_Identity=33.0058939096267, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24586591, Length=482, Percent_Identity=33.6099585062241, Blast_Score=241, Evalue=1e-63,
Organism=Drosophila melanogaster, GI45549022, Length=487, Percent_Identity=32.0328542094456, Blast_Score=234, Evalue=9e-62,
Organism=Drosophila melanogaster, GI24586589, Length=473, Percent_Identity=33.615221987315, Blast_Score=231, Evalue=9e-61,
Organism=Drosophila melanogaster, GI281360393, Length=432, Percent_Identity=33.3333333333333, Blast_Score=191, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase [H]

EC number: =3.2.1.20 [H]

Molecular weight: Translated: 64249; Mature: 64249

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPVVAYRAGEPGQPGGRSGPAAPPAGTEETDYSAWWHDAVMYEVYVRSFADADGDGVGD
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
IEGIRRRLPDLADLGVDGIWVSPFYRSPMADHGYDVADHTDVDPLFGTLSDIDALLRDAH
HHHHHHHCCHHHHCCCCCEEECCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EAGLKVVVDLVPNHSSSAHPAFQAALAAGPDAPERDLYLFRDGRGPDGALPPNNWISVFG
HCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC
GPAWTRVPDGQWYLHLFAPEQPDWNWQHPRVRAAHAEIIRFWLDRGVDGFRIDVSHGLVK
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
DGELRDHPTGALPTPETGFREEIEPHAWDQDGVHEIYREWRAIVDAHDRRDGRQRVLVGE
CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
TWVADPGRLARYVRPDELHLTFTFSLLYAPFSAPAWRAAIDAARAATAAVCAPPTWVLAN
CCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEECCCEEEECC
HDVVRPVSRYGGGETGLRRARAALLTLLALPGTVYLYQGDELGLPQVDIPPEARQDPVWE
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
RSGHTSPGRDGARVPLPWSGDAPPYGFSAGAAEPWLPQPPDWATLTASAQSVDPMSTRVL
CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
VRGALALRRALPFLGGPAGPGSAAEPAEPGHSGEPGRPAGTRPGFRWRDDLPADCLAFDR
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
TSAAGALTCVMATRSEIRLEIAGRLVLASGPVGYDGATLVLPPDTTAWVIPRSG
CCCCCEEEEEECCCCCEEEEEECEEEEECCCCCCCCEEEEECCCCCEEEEECCC
>Mature Secondary Structure
MDPVVAYRAGEPGQPGGRSGPAAPPAGTEETDYSAWWHDAVMYEVYVRSFADADGDGVGD
CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
IEGIRRRLPDLADLGVDGIWVSPFYRSPMADHGYDVADHTDVDPLFGTLSDIDALLRDAH
HHHHHHHCCHHHHCCCCCEEECCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EAGLKVVVDLVPNHSSSAHPAFQAALAAGPDAPERDLYLFRDGRGPDGALPPNNWISVFG
HCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEC
GPAWTRVPDGQWYLHLFAPEQPDWNWQHPRVRAAHAEIIRFWLDRGVDGFRIDVSHGLVK
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
DGELRDHPTGALPTPETGFREEIEPHAWDQDGVHEIYREWRAIVDAHDRRDGRQRVLVGE
CCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
TWVADPGRLARYVRPDELHLTFTFSLLYAPFSAPAWRAAIDAARAATAAVCAPPTWVLAN
CCCCCHHHHHHHCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEECCCEEEECC
HDVVRPVSRYGGGETGLRRARAALLTLLALPGTVYLYQGDELGLPQVDIPPEARQDPVWE
CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
RSGHTSPGRDGARVPLPWSGDAPPYGFSAGAAEPWLPQPPDWATLTASAQSVDPMSTRVL
CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHH
VRGALALRRALPFLGGPAGPGSAAEPAEPGHSGEPGRPAGTRPGFRWRDDLPADCLAFDR
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECC
TSAAGALTCVMATRSEIRLEIAGRLVLASGPVGYDGATLVLPPDTTAWVIPRSG
CCCCCEEEEEECCCCCEEEEEECEEEEECCCCCCCCEEEEECCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10400573; 11481430 [H]