| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yxxB [H]
Identifier: 158317043
GI number: 158317043
Start: 6361664
End: 6362506
Strand: Reverse
Name: yxxB [H]
Synonym: Franean1_5287
Alternate gene names: 158317043
Gene position: 6362506-6361664 (Counterclockwise)
Preceding gene: 158317044
Following gene: 158317042
Centisome position: 70.84
GC content: 67.62
Gene sequence:
>843_bases GTGTCCGTACCCAGTGTCGCGCGACCAGGGCGCGCGGCCGCGTCTGTCGGCGGTGCCAAGGCCCGGCGTGCCCACGACAG CAAGGCGGTCAACCTGACCGCACGCCTCGGCTTCGCAGCCCGAGGACTGGTCTACGTGCTGATCGGGATCATCGCGCTCC AGATCGCGTTCGGCGGTTCCGGGGAGCAGGCGAACCGGCAGGGCGCGCTGCGGGAGATCTCGGACAAGCCCTTCGGCACG GCGGTGCTGATCCTGCTCGTCATCGGATTTGTCGGATATGCGCTGTGGCGCCTGCTGGAAGCGGCCGTCGGGCATCACGA GGAATCCGACGAGAAGAAGCGCACAGCCAAGCGGGTGGTGTCCGGTATCCGCAGTGTGATCTACCTTGTGATCGCGGGCA GCACCGTCGCCTTCCTCACCTCAGGTAGTTCGGGATCCGGCTCTGGTGAGCCCGCTCCGTATACGGCACGGGTCATGGAT AACACCGGTGGCCGGTGGCTGGTCGGCGCGGTCGGCGTCGGCATCGGCATGATCGTCAAGGGTGTGACGGCCAAGTTCGA GGAGAAGCTCAAGAGCGGGGAGATGAGCCCCGCGATGCGCGCCGCCAGCAAGCGCATCGGCCAGGTCGGCTACATCGCGC GCGGCATCGTGTTCGGCCTGGCCGGGGTGTTCGTGGTCAAGGCCGCCGTCGAGTTCGACCCCGACGAGGCCAAGGGCTTC GACGGCACGCTCCGCACGATCGCCGACCAGGCGTACGGCCAAGTGCTGCTCGTCGTCTGTGCCGTCGGCCTGGTCCTGTT CGGCGCCTACTCCTTCATCGAGGCGCGGTACCGCAAGCTCTGA
Upstream 100 bases:
>100_bases GACCTGATGTCGTCCGGCTGACGCCTGTCCGTTTTGTGAGCCTCCTGTCGGGCAGGCGGCCTAAGGGCGTTCCGCCCGAA CTGTTTGTCGAGGAGGACCC
Downstream 100 bases:
>100_bases ACCAGCTCCCCGCACGGCCGAACCGCCCGCCGGACGAAGGCGGGCGGTTCGGATCATCCGCCCTAGTGGTTTGCTTTGTC GGTCGTCGCCTTCCGGACAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MSVPSVARPGRAAASVGGAKARRAHDSKAVNLTARLGFAARGLVYVLIGIIALQIAFGGSGEQANRQGALREISDKPFGT AVLILLVIGFVGYALWRLLEAAVGHHEESDEKKRTAKRVVSGIRSVIYLVIAGSTVAFLTSGSSGSGSGEPAPYTARVMD NTGGRWLVGAVGVGIGMIVKGVTAKFEEKLKSGEMSPAMRAASKRIGQVGYIARGIVFGLAGVFVVKAAVEFDPDEAKGF DGTLRTIADQAYGQVLLVVCAVGLVLFGAYSFIEARYRKL
Sequences:
>Translated_280_residues MSVPSVARPGRAAASVGGAKARRAHDSKAVNLTARLGFAARGLVYVLIGIIALQIAFGGSGEQANRQGALREISDKPFGT AVLILLVIGFVGYALWRLLEAAVGHHEESDEKKRTAKRVVSGIRSVIYLVIAGSTVAFLTSGSSGSGSGEPAPYTARVMD NTGGRWLVGAVGVGIGMIVKGVTAKFEEKLKSGEMSPAMRAASKRIGQVGYIARGIVFGLAGVFVVKAAVEFDPDEAKGF DGTLRTIADQAYGQVLLVVCAVGLVLFGAYSFIEARYRKL >Mature_279_residues SVPSVARPGRAAASVGGAKARRAHDSKAVNLTARLGFAARGLVYVLIGIIALQIAFGGSGEQANRQGALREISDKPFGTA VLILLVIGFVGYALWRLLEAAVGHHEESDEKKRTAKRVVSGIRSVIYLVIAGSTVAFLTSGSSGSGSGEPAPYTARVMDN TGGRWLVGAVGVGIGMIVKGVTAKFEEKLKSGEMSPAMRAASKRIGQVGYIARGIVFGLAGVFVVKAAVEFDPDEAKGFD GTLRTIADQAYGQVLLVVCAVGLVLFGAYSFIEARYRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009597 [H]
Pfam domain/function: PF06724 DUF1206 [H]
EC number: NA
Molecular weight: Translated: 29245; Mature: 29114
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVPSVARPGRAAASVGGAKARRAHDSKAVNLTARLGFAARGLVYVLIGIIALQIAFGGS CCCCCCCCCCCHHHHCCCHHHHHHCCCHHEEHHHHHCHHHHHHHHHHHHHHHHHHHCCCC GEQANRQGALREISDKPFGTAVLILLVIGFVGYALWRLLEAAVGHHEESDEKKRTAKRVV CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH SGIRSVIYLVIAGSTVAFLTSGSSGSGSGEPAPYTARVMDNTGGRWLVGAVGVGIGMIVK HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHH GVTAKFEEKLKSGEMSPAMRAASKRIGQVGYIARGIVFGLAGVFVVKAAVEFDPDEAKGF HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC DGTLRTIADQAYGQVLLVVCAVGLVLFGAYSFIEARYRKL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SVPSVARPGRAAASVGGAKARRAHDSKAVNLTARLGFAARGLVYVLIGIIALQIAFGGS CCCCCCCCCCHHHHCCCHHHHHHCCCHHEEHHHHHCHHHHHHHHHHHHHHHHHHHCCCC GEQANRQGALREISDKPFGTAVLILLVIGFVGYALWRLLEAAVGHHEESDEKKRTAKRVV CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH SGIRSVIYLVIAGSTVAFLTSGSSGSGSGEPAPYTARVMDNTGGRWLVGAVGVGIGMIVK HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHHH GVTAKFEEKLKSGEMSPAMRAASKRIGQVGYIARGIVFGLAGVFVVKAAVEFDPDEAKGF HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC DGTLRTIADQAYGQVLLVVCAVGLVLFGAYSFIEARYRKL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377; 8550462 [H]