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The map label for this gene is ybbD [H]

Identifier: 158317032

GI number: 158317032

Start: 6347184

End: 6349154

Strand: Reverse

Name: ybbD [H]

Synonym: Franean1_5276

Alternate gene names: 158317032

Gene position: 6349154-6347184 (Counterclockwise)

Preceding gene: 158317035

Following gene: 158317031

Centisome position: 70.69

GC content: 75.9

Gene sequence:

>1971_bases
ATGGTCATGCGGCGTGTGCGGGTCGTCGGGGTGGCGCTCGCGGTCGTCCTGGCGACGCTGGCCGGTGTCACGGCGTTCGC
CTGGGCGGTCCGCGGCACCGACGCGGGCGGCTCGATGGCGGACCGGCTCAGCCTCGCCGACGGCGACACCGCAGGCGGCT
CCGCCGGGGCGGGGGACCCGGGCGGCGGCGCGGCGGGCGCGGAATCCGGGCGCGGCACCGCGGAGCACCCCGCCGACGGC
CCGGAAACCGGCGCCGACGAGCTGTCGGCCGCCGACCCGGGCGGCGCGGGGAGCGGCCCCGGCGCCGGTTCGGCCGAGGA
GAACAGCTGGGTCGAGCCCACGCTGGCCGGCCTGTCGCTGGAGCAGCGCGTAGGCCAGATGATGATGGGATACGTCTTCG
GTACCGCGGGCGCCGACCGGAGCCCGGCCGTTGTCACCGCGAACCGGCGGACGTCCGGTGTGGACACGGCCGCCGAAGCC
GTCGCGAGACGGGGCCTGGGCGGCGTGATCTACTTCGACGCCGGCGGGACGGGCCCGGGGGCGCTCCCGGACAACATCGT
CAACCCGAACCAGGTCAAGACGCTGTCCGCGGACCTGAGCGCGGCGGCCAGCATCCCGCTGCTGATCGCCGCGGACCAGG
AGCAGGGAACGGTGCTGCGCGTCCGGGACGGCGTGACCCTGCTGCCCGGCCAGATGGCACAGGGCGCGACGGGACGTCCC
ACCGACGCGCGGGACGCCGCGCAGATCACCGGCGCGGACCTGCGCGCCCTGGGCATCAACGTCGACTTCGCCCCGGACGC
AGACGTCAACAGCGACCCGGCGAACCCCGTGATCGGTGAGCGCTCCTTCGGCGACGACCCTACGGCGGTCGGGCGGTTCA
CCGCGGCGGCGGTCGAGGGATACCGGCAGGTCGGGGTGGCCGCGGCCGCGAAACACTTTCCCGGGCACGGCGCGACGTCC
GTCGACAGCCACGCCGACCTGCCGACGATCACCAGAGACCGGGCGGCGCTGACGGCGCTCGACCTGCCGCCGTTCCGGGC
GGCGATCGCCGCGGGCGTACCGATGGTCATGGTCGGTCATCTGAACGTCCCCGCGCTCGACCCGGCCGCGCCGGCGACGC
TGTCGAAGCCGGTGGTCGACGGCCTGCTGCGCCACGAGCTCGGCTTCGACGGCGTCATCGTCACCGACGCGCTGAACATG
GCCGCGATCACCGAGCACAACACGCCCGGCGGCGCGGCGGTGCGAGCCGTCCAGGCCGGCGTCGACATGCTGCTGATGCC
GCCGGACCTGACGCAGGCGCTTGATGCTGTGGTTTCCGCTGTGCGCTCCGGGGCGATCGTTCCGGAGCGGATCGACGCCT
CGGTACGTCGAATCCTGAGGATGAAGTGGAGGCTGGCGCACACCGAGCCCGCCGCGGCCCGAACCCCCGAGGAGGCGGCG
GCCACCGCGGCCGCGATCGCCGAGCGGGCGATCACGCTCCTTGACCAGCCGACGTGTGACCTGCTCCCGCTCAGCCGCGG
CACCGCCGGCGCCGGTGCGGGCGGGACGCAGCCGGCGGTGGAGGTCTCCGGGCCGTCGGGCGCCGCGAAGATGCTCGTGG
ACGCACTGGGTGCCCGGGGGATCGGCGCCCGGTTGGCCGCCCAGGGCTCCGGCCGCCCGCCAGCGCCGCCCGCAGCGGGC
GCCTCGGGAGCGGGTACGGCTGTGGTCCGGGTGGTGCTGGTCGGGAACTCGCCGCCGCCCGTCACCGACCGGCGGACCGT
GGTCGTGTCGACCGGGACGCCCTACCGTCCGCCGGTGGCCGCCGGGGCGTGGCTGGCGAGCTATTCACGCGACCCAGCGT
CGATGAAGGCGCTGGCGGCGGTGCTGGCCGGCGCGGTGCCACCCTCCGGCCGGCTGCCGGTCGTCACCCGAACCGCGACC
GGCACCGCGTTGCCGCGCGGCGCAGGCCTACCGACCCCGCGCGCCTGCTGA

Upstream 100 bases:

>100_bases
GGCTGGTTTCGGTTCCCGGCCGGTTCCGGGCGGTCCGGTCCGGGCAGGTGAGGTCACAGACGGTGCGAGGAGACGGATCG
GGCGACTCACGGACGAGGGG

Downstream 100 bases:

>100_bases
CCTCGGCCGCTCCTCCCGACCTGTGGTCGATGGTGTGGCCCGTTGCCGGGTTTCATCATCGGCAGGTGGTGGCTGTGGTC
CGGGCTGGTCGGGGTTGGCG

Product: glycoside hydrolase family 3 protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 656; Mature: 656

Protein sequence:

>656_residues
MVMRRVRVVGVALAVVLATLAGVTAFAWAVRGTDAGGSMADRLSLADGDTAGGSAGAGDPGGGAAGAESGRGTAEHPADG
PETGADELSAADPGGAGSGPGAGSAEENSWVEPTLAGLSLEQRVGQMMMGYVFGTAGADRSPAVVTANRRTSGVDTAAEA
VARRGLGGVIYFDAGGTGPGALPDNIVNPNQVKTLSADLSAAASIPLLIAADQEQGTVLRVRDGVTLLPGQMAQGATGRP
TDARDAAQITGADLRALGINVDFAPDADVNSDPANPVIGERSFGDDPTAVGRFTAAAVEGYRQVGVAAAAKHFPGHGATS
VDSHADLPTITRDRAALTALDLPPFRAAIAAGVPMVMVGHLNVPALDPAAPATLSKPVVDGLLRHELGFDGVIVTDALNM
AAITEHNTPGGAAVRAVQAGVDMLLMPPDLTQALDAVVSAVRSGAIVPERIDASVRRILRMKWRLAHTEPAAARTPEEAA
ATAAAIAERAITLLDQPTCDLLPLSRGTAGAGAGGTQPAVEVSGPSGAAKMLVDALGARGIGARLAAQGSGRPPAPPAAG
ASGAGTAVVRVVLVGNSPPPVTDRRTVVVSTGTPYRPPVAAGAWLASYSRDPASMKALAAVLAGAVPPSGRLPVVTRTAT
GTALPRGAGLPTPRAC

Sequences:

>Translated_656_residues
MVMRRVRVVGVALAVVLATLAGVTAFAWAVRGTDAGGSMADRLSLADGDTAGGSAGAGDPGGGAAGAESGRGTAEHPADG
PETGADELSAADPGGAGSGPGAGSAEENSWVEPTLAGLSLEQRVGQMMMGYVFGTAGADRSPAVVTANRRTSGVDTAAEA
VARRGLGGVIYFDAGGTGPGALPDNIVNPNQVKTLSADLSAAASIPLLIAADQEQGTVLRVRDGVTLLPGQMAQGATGRP
TDARDAAQITGADLRALGINVDFAPDADVNSDPANPVIGERSFGDDPTAVGRFTAAAVEGYRQVGVAAAAKHFPGHGATS
VDSHADLPTITRDRAALTALDLPPFRAAIAAGVPMVMVGHLNVPALDPAAPATLSKPVVDGLLRHELGFDGVIVTDALNM
AAITEHNTPGGAAVRAVQAGVDMLLMPPDLTQALDAVVSAVRSGAIVPERIDASVRRILRMKWRLAHTEPAAARTPEEAA
ATAAAIAERAITLLDQPTCDLLPLSRGTAGAGAGGTQPAVEVSGPSGAAKMLVDALGARGIGARLAAQGSGRPPAPPAAG
ASGAGTAVVRVVLVGNSPPPVTDRRTVVVSTGTPYRPPVAAGAWLASYSRDPASMKALAAVLAGAVPPSGRLPVVTRTAT
GTALPRGAGLPTPRAC
>Mature_656_residues
MVMRRVRVVGVALAVVLATLAGVTAFAWAVRGTDAGGSMADRLSLADGDTAGGSAGAGDPGGGAAGAESGRGTAEHPADG
PETGADELSAADPGGAGSGPGAGSAEENSWVEPTLAGLSLEQRVGQMMMGYVFGTAGADRSPAVVTANRRTSGVDTAAEA
VARRGLGGVIYFDAGGTGPGALPDNIVNPNQVKTLSADLSAAASIPLLIAADQEQGTVLRVRDGVTLLPGQMAQGATGRP
TDARDAAQITGADLRALGINVDFAPDADVNSDPANPVIGERSFGDDPTAVGRFTAAAVEGYRQVGVAAAAKHFPGHGATS
VDSHADLPTITRDRAALTALDLPPFRAAIAAGVPMVMVGHLNVPALDPAAPATLSKPVVDGLLRHELGFDGVIVTDALNM
AAITEHNTPGGAAVRAVQAGVDMLLMPPDLTQALDAVVSAVRSGAIVPERIDASVRRILRMKWRLAHTEPAAARTPEEAA
ATAAAIAERAITLLDQPTCDLLPLSRGTAGAGAGGTQPAVEVSGPSGAAKMLVDALGARGIGARLAAQGSGRPPAPPAAG
ASGAGTAVVRVVLVGNSPPPVTDRRTVVVSTGTPYRPPVAAGAWLASYSRDPASMKALAAVLAGAVPPSGRLPVVTRTAT
GTALPRGAGLPTPRAC

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=275, Percent_Identity=33.8181818181818, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788453, Length=424, Percent_Identity=21.6981132075472, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 65080; Mature: 65080

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMRRVRVVGVALAVVLATLAGVTAFAWAVRGTDAGGSMADRLSLADGDTAGGSAGAGDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHEECCCCCCCCCCCCCCCC
GGGAAGAESGRGTAEHPADGPETGADELSAADPGGAGSGPGAGSAEENSWVEPTLAGLSL
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
EQRVGQMMMGYVFGTAGADRSPAVVTANRRTSGVDTAAEAVARRGLGGVIYFDAGGTGPG
HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC
ALPDNIVNPNQVKTLSADLSAAASIPLLIAADQEQGTVLRVRDGVTLLPGQMAQGATGRP
CCCCCCCCCCHHEEEHHHHHHHCCCCEEEEECCCCCCEEEEECCCEECCCCCCCCCCCCC
TDARDAAQITGADLRALGINVDFAPDADVNSDPANPVIGERSFGDDPTAVGRFTAAAVEG
CCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YRQVGVAAAAKHFPGHGATSVDSHADLPTITRDRAALTALDLPPFRAAIAAGVPMVMVGH
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCHHHHHHHCCCCEEEEEC
LNVPALDPAAPATLSKPVVDGLLRHELGFDGVIVTDALNMAAITEHNTPGGAAVRAVQAG
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
VDMLLMPPDLTQALDAVVSAVRSGAIVPERIDASVRRILRMKWRLAHTEPAAARTPEEAA
CCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ATAAAIAERAITLLDQPTCDLLPLSRGTAGAGAGGTQPAVEVSGPSGAAKMLVDALGARG
HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
IGARLAAQGSGRPPAPPAAGASGAGTAVVRVVLVGNSPPPVTDRRTVVVSTGTPYRPPVA
CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCHH
AGAWLASYSRDPASMKALAAVLAGAVPPSGRLPVVTRTATGTALPRGAGLPTPRAC
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVMRRVRVVGVALAVVLATLAGVTAFAWAVRGTDAGGSMADRLSLADGDTAGGSAGAGDP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHEECCCCCCCCCCCCCCCC
GGGAAGAESGRGTAEHPADGPETGADELSAADPGGAGSGPGAGSAEENSWVEPTLAGLSL
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
EQRVGQMMMGYVFGTAGADRSPAVVTANRRTSGVDTAAEAVARRGLGGVIYFDAGGTGPG
HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC
ALPDNIVNPNQVKTLSADLSAAASIPLLIAADQEQGTVLRVRDGVTLLPGQMAQGATGRP
CCCCCCCCCCHHEEEHHHHHHHCCCCEEEEECCCCCCEEEEECCCEECCCCCCCCCCCCC
TDARDAAQITGADLRALGINVDFAPDADVNSDPANPVIGERSFGDDPTAVGRFTAAAVEG
CCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
YRQVGVAAAAKHFPGHGATSVDSHADLPTITRDRAALTALDLPPFRAAIAAGVPMVMVGH
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEECCCHHHHHHHCCCCEEEEEC
LNVPALDPAAPATLSKPVVDGLLRHELGFDGVIVTDALNMAAITEHNTPGGAAVRAVQAG
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHC
VDMLLMPPDLTQALDAVVSAVRSGAIVPERIDASVRRILRMKWRLAHTEPAAARTPEEAA
CCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ATAAAIAERAITLLDQPTCDLLPLSRGTAGAGAGGTQPAVEVSGPSGAAKMLVDALGARG
HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC
IGARLAAQGSGRPPAPPAAGASGAGTAVVRVVLVGNSPPPVTDRRTVVVSTGTPYRPPVA
CCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCHH
AGAWLASYSRDPASMKALAAVLAGAVPPSGRLPVVTRTATGTALPRGAGLPTPRAC
HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]