| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158316991
Identifier: 158316991
GI number: 158316991
Start: 6288055
End: 6289338
Strand: Reverse
Name: 158316991
Synonym: Franean1_5235
Alternate gene names: NA
Gene position: 6289338-6288055 (Counterclockwise)
Preceding gene: 158316992
Following gene: 158316990
Centisome position: 70.02
GC content: 73.91
Gene sequence:
>1284_bases GTGGCGGTGACTGCGACCAAGCCCGCCCTCGACACCCGGTCCCGGGACGCCGGGAAACCGGCCCCCGACACGGAGCCCGA ATCCGCCCGGTTCCCGCTGCCGTGGGTCGTGGCCGGAGCGGCCGTGCCGATGCTGCTCACCCTGTGGGACGTCCAGGCAC AGCACCACGACTTCGACGCCGGCTTCGGGCGCGGGCTCGCGGCGGTCGCCTTCGCCGGGCTGCTCGGCGCGCTGCTGGTG CTGACCGTGCACGAACTCAACCCCGACGAGCGGGCACTGGGCACCGGGGTGGCACTGGCCGCCGTCCTGACCGTGAGCTT CCTGAACCAGTCCCGGTTCCTGTGGGAGTCCCCGTCCCTGCTGTTCGGCGGGCTCGCCGTGGCGGCGATGGCGGTGGCCG GCCGCTGGGCCCGGCTGCACGGTGACGACCCCCGTGCGCTGGTCCCGCCGCCGAGGACGGCGCCTGTCCTGGCTACCGCG GTCGCCCTGCTGGCAGGTCTCATCGCCGGGTTCGGGCCCGTCGATGAGACGCTCGGTGCCCAACTGGCCGAGCTCCTGCG CTACCTCCTGCTCGGGCTGGGAGCCGTGGTGCTGCTGGCCGGTGATCCGGCCGGGAACGACGGCGAGGTCACGTTGGACG AGCAGTTCCGGCGGTCGGTCCTGGCCGCGACCACCCCGATCGGCCTGCTGTTCGTGACCTGGGAGCCGGGCTCGGCCGCG ATCCTGGCCGCCGGAGTCGTGGCGATGCTGGCGGCCCGGCGCTTCTGGTTCTCGGCGGGGCTCACCGCGGTGGTGGCCGT GGCCGTGGGAACGGTGTGGTGCTGGCTTGCCGCCGGGAAGGCGGACAAGGCGTGGCGCGACAGCCACCTGGAGAAGCGGG CGGAACCCGTCTGGGACAGCAGGATCTGGGAGAGCGCGTCACTCGGCAAGCACCGGAGCTGGGTCGACCAGGAGCTCCCG GCCGCGACGCTCGTTGGCCAGTACGGGCACTTCTTCGCCGTCCTGGGCTGCCTCCTCGTCGCCGCCTTCGGCTGGCTGCT GGTGCGGCTGGTGCTGGCGGCCCGTCCCTCCTCGGTCCAGGTGCTGGCGGCCGGACTGGTGGCCATGCTCGTCGCCGGGC TGGCCCTGCCCCTCGTGGCGCTGCTGACCAACCATCGGTTCGGCCTCACCGTGCCGTTGCTGTCGAGTGGCGTGACCTCG TTGATCCTCGCCCTCGCCTCGGTCGGCGTCGCGCTCGGCGCGGCGGCGGGCCCACGGGTGAGCGGCGTCGGCGGGCGGAG GTAG
Upstream 100 bases:
>100_bases CCTCCGTCGGCGGTAGGTACGGCCTGCTCGGTGGCTGGCGCGAATACAGGTACGCCCTCGCCCTTCTGGCGGCTTGCCTG ATCACCGGCCTGGCGGCGCT
Downstream 100 bases:
>100_bases TCAGCTGTCCAGCTCACCTGTCGATTCCGCGGGCTCCGCCGGCTTCGGTGCCGACAGAGCGTTCGGCGGCGCCGCTTTCG AGGCCACCGGCTCCGACGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MAVTATKPALDTRSRDAGKPAPDTEPESARFPLPWVVAGAAVPMLLTLWDVQAQHHDFDAGFGRGLAAVAFAGLLGALLV LTVHELNPDERALGTGVALAAVLTVSFLNQSRFLWESPSLLFGGLAVAAMAVAGRWARLHGDDPRALVPPPRTAPVLATA VALLAGLIAGFGPVDETLGAQLAELLRYLLLGLGAVVLLAGDPAGNDGEVTLDEQFRRSVLAATTPIGLLFVTWEPGSAA ILAAGVVAMLAARRFWFSAGLTAVVAVAVGTVWCWLAAGKADKAWRDSHLEKRAEPVWDSRIWESASLGKHRSWVDQELP AATLVGQYGHFFAVLGCLLVAAFGWLLVRLVLAARPSSVQVLAAGLVAMLVAGLALPLVALLTNHRFGLTVPLLSSGVTS LILALASVGVALGAAAGPRVSGVGGRR
Sequences:
>Translated_427_residues MAVTATKPALDTRSRDAGKPAPDTEPESARFPLPWVVAGAAVPMLLTLWDVQAQHHDFDAGFGRGLAAVAFAGLLGALLV LTVHELNPDERALGTGVALAAVLTVSFLNQSRFLWESPSLLFGGLAVAAMAVAGRWARLHGDDPRALVPPPRTAPVLATA VALLAGLIAGFGPVDETLGAQLAELLRYLLLGLGAVVLLAGDPAGNDGEVTLDEQFRRSVLAATTPIGLLFVTWEPGSAA ILAAGVVAMLAARRFWFSAGLTAVVAVAVGTVWCWLAAGKADKAWRDSHLEKRAEPVWDSRIWESASLGKHRSWVDQELP AATLVGQYGHFFAVLGCLLVAAFGWLLVRLVLAARPSSVQVLAAGLVAMLVAGLALPLVALLTNHRFGLTVPLLSSGVTS LILALASVGVALGAAAGPRVSGVGGRR >Mature_426_residues AVTATKPALDTRSRDAGKPAPDTEPESARFPLPWVVAGAAVPMLLTLWDVQAQHHDFDAGFGRGLAAVAFAGLLGALLVL TVHELNPDERALGTGVALAAVLTVSFLNQSRFLWESPSLLFGGLAVAAMAVAGRWARLHGDDPRALVPPPRTAPVLATAV ALLAGLIAGFGPVDETLGAQLAELLRYLLLGLGAVVLLAGDPAGNDGEVTLDEQFRRSVLAATTPIGLLFVTWEPGSAAI LAAGVVAMLAARRFWFSAGLTAVVAVAVGTVWCWLAAGKADKAWRDSHLEKRAEPVWDSRIWESASLGKHRSWVDQELPA ATLVGQYGHFFAVLGCLLVAAFGWLLVRLVLAARPSSVQVLAAGLVAMLVAGLALPLVALLTNHRFGLTVPLLSSGVTSL ILALASVGVALGAAAGPRVSGVGGRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44283; Mature: 44152
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVTATKPALDTRSRDAGKPAPDTEPESARFPLPWVVAGAAVPMLLTLWDVQAQHHDFDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC GFGRGLAAVAFAGLLGALLVLTVHELNPDERALGTGVALAAVLTVSFLNQSRFLWESPSL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH LFGGLAVAAMAVAGRWARLHGDDPRALVPPPRTAPVLATAVALLAGLIAGFGPVDETLGA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH QLAELLRYLLLGLGAVVLLAGDPAGNDGEVTLDEQFRRSVLAATTPIGLLFVTWEPGSAA HHHHHHHHHHHHHHHEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCCEEEEEEECCCCHH ILAAGVVAMLAARRFWFSAGLTAVVAVAVGTVWCWLAAGKADKAWRDSHLEKRAEPVWDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH RIWESASLGKHRSWVDQELPAATLVGQYGHFFAVLGCLLVAAFGWLLVRLVLAARPSSVQ HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH VLAAGLVAMLVAGLALPLVALLTNHRFGLTVPLLSSGVTSLILALASVGVALGAAAGPRV HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC SGVGGRR CCCCCCC >Mature Secondary Structure AVTATKPALDTRSRDAGKPAPDTEPESARFPLPWVVAGAAVPMLLTLWDVQAQHHDFDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC GFGRGLAAVAFAGLLGALLVLTVHELNPDERALGTGVALAAVLTVSFLNQSRFLWESPSL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH LFGGLAVAAMAVAGRWARLHGDDPRALVPPPRTAPVLATAVALLAGLIAGFGPVDETLGA HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH QLAELLRYLLLGLGAVVLLAGDPAGNDGEVTLDEQFRRSVLAATTPIGLLFVTWEPGSAA HHHHHHHHHHHHHHHEEEEECCCCCCCCCEEHHHHHHHHHHHHCCCCEEEEEEECCCCHH ILAAGVVAMLAARRFWFSAGLTAVVAVAVGTVWCWLAAGKADKAWRDSHLEKRAEPVWDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHH RIWESASLGKHRSWVDQELPAATLVGQYGHFFAVLGCLLVAAFGWLLVRLVLAARPSSVQ HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH VLAAGLVAMLVAGLALPLVALLTNHRFGLTVPLLSSGVTSLILALASVGVALGAAAGPRV HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC SGVGGRR CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA