Click here to switch to the map view.

The map label for this gene is 158316950

Identifier: 158316950

GI number: 158316950

Start: 6236660

End: 6237061

Strand: Reverse

Name: 158316950

Synonym: Franean1_5194

Alternate gene names: NA

Gene position: 6237061-6236660 (Counterclockwise)

Preceding gene: 158316951

Following gene: 158316949

Centisome position: 69.44

GC content: 67.91

Gene sequence:

>402_bases
ATGATCGGAGGAGCCGTGGGCGAGGGGCGCGGCTGGTTGGGACGACGGTTCCACCGGCTGACAGCGGACAACCAGGAACT
TGAGGACGAGGAGCTGCGGCAGGCGTCGGTCGCCGTCGGCGCGAACCCGATGCACGCCTGTCGGGACCGCGAGGAGGCGT
GCGTCGCCGGATCCATACGTTCGGTAACCGTCCGGGCGCGTTCAGGGGCGCCGAGTCTGGAGGTCGACCTCTATGATGGA
AGCGGCACCGTGACTCTCGTGTTCCTCGGCCGCAAGCACATCGCGGGCATAGAGGCCGGTCGATCGGTCAAGGCATCCGG
TCGGGTCGTCGTGCGCGACGAGCGGACCACGATGTTCAATCCCCGCTACGAGCTGCTGCCAGCCTCCTCGACCAGCGCCT
GA

Upstream 100 bases:

>100_bases
TTCAGGGCGCCGATGCGTGGGCTCGTGGTGGGATTCCCACCCGCCGGTCCGGTGACGTCCCAGGTTTCGGATTCCGTCGC
CCGGCTTCGGGAGCGGTTCG

Downstream 100 bases:

>100_bases
GCGGCGCCCGGCGACAGGACTACACCGCCCATGCCACCAGCGTCTCCGCAGGATCCGTCAGTGCCGAACCCGGCGACGGG
TCCGGGCGACCCCGGCGGAG

Product: OB-fold tRNA/helicase-type nucleic acid binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MIGGAVGEGRGWLGRRFHRLTADNQELEDEELRQASVAVGANPMHACRDREEACVAGSIRSVTVRARSGAPSLEVDLYDG
SGTVTLVFLGRKHIAGIEAGRSVKASGRVVVRDERTTMFNPRYELLPASSTSA

Sequences:

>Translated_133_residues
MIGGAVGEGRGWLGRRFHRLTADNQELEDEELRQASVAVGANPMHACRDREEACVAGSIRSVTVRARSGAPSLEVDLYDG
SGTVTLVFLGRKHIAGIEAGRSVKASGRVVVRDERTTMFNPRYELLPASSTSA
>Mature_133_residues
MIGGAVGEGRGWLGRRFHRLTADNQELEDEELRQASVAVGANPMHACRDREEACVAGSIRSVTVRARSGAPSLEVDLYDG
SGTVTLVFLGRKHIAGIEAGRSVKASGRVVVRDERTTMFNPRYELLPASSTSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14297; Mature: 14297

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGGAVGEGRGWLGRRFHRLTADNQELEDEELRQASVAVGANPMHACRDREEACVAGSIR
CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHEECCCCE
SVTVRARSGAPSLEVDLYDGSGTVTLVFLGRKHIAGIEAGRSVKASGRVVVRDERTTMFN
EEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCEEEC
PRYELLPASSTSA
CCEEEECCCCCCC
>Mature Secondary Structure
MIGGAVGEGRGWLGRRFHRLTADNQELEDEELRQASVAVGANPMHACRDREEACVAGSIR
CCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHCCCCHHEECCCCE
SVTVRARSGAPSLEVDLYDGSGTVTLVFLGRKHIAGIEAGRSVKASGRVVVRDERTTMFN
EEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCEEEC
PRYELLPASSTSA
CCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA